# $NetBSD: Makefile,v 1.19 2024/10/11 22:41:14 bacon Exp $ DISTNAME= bcftools-1.21 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/} GITHUB_RELEASE= ${PKGVERSION_NOREV} EXTRACT_SUFX= .tar.bz2 OWNER= bacon@NetBSD.org HOMEPAGE= https://www.htslib.org/ COMMENT= Tools for manipulating BCF and VCF variant call files LICENSE= mit USE_TOOLS+= autoconf automake autoreconf bash gmake perl GNU_CONFIGURE= yes CONFIGURE_ARGS+= --with-htslib=system MAKE_ENV+= USE_GPL=1 TEST_TARGET= test SUBST_CLASSES+= version SUBST_STAGE.version= pre-configure SUBST_SED.version= -e "s|m4_esyscmd_s(\[./version.sh 2>/dev/null\])|[${PKGVERSION_NOREV}]|" SUBST_FILES.version= configure.ac SUBST_CLASSES+= bash SUBST_STAGE.bash= pre-configure SUBST_SED.bash+= -e 's|/bin/bash|${TOOLS_PATH.bash}|' SUBST_SED.bash+= -e 's|\\/bin\\/bash|${TOOLS_PATH.bash:S,/,\\\/,g}|' SUBST_FILES.bash= test/test.pl REPLACE_PERL+= misc/*.pl REPLACE_PERL+= misc/fix-broken-GATK-Double-vs-Integer REPLACE_PERL+= misc/plot-vcfstats REPLACE_PERL+= test/test.pl REPLACE_PYTHON+= misc/*.py pre-configure: cd ${WRKSRC} && autoreconf -if post-install: ${MV} ${DESTDIR}${PREFIX}/bin/color-chrs.pl \ ${DESTDIR}${PREFIX}/bin/color-chrs ${MV} ${DESTDIR}${PREFIX}/bin/guess-ploidy.py\ ${DESTDIR}${PREFIX}/bin/guess-ploidy ${MV} ${DESTDIR}${PREFIX}/bin/plot-roh.py \ ${DESTDIR}${PREFIX}/bin/plot-roh ${MV} ${DESTDIR}${PREFIX}/bin/run-roh.pl \ ${DESTDIR}${PREFIX}/bin/run-roh ${MV} ${DESTDIR}${PREFIX}/bin/vcfutils.pl \ ${DESTDIR}${PREFIX}/bin/vcfutils .include "../../devel/zlib/buildlink3.mk" .include "../../math/gsl/buildlink3.mk" .include "../../lang/python/application.mk" .include "../../biology/htslib/buildlink3.mk" .include "../../mk/bsd.pkg.mk"