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Revision 1.5 / (download) - annotate - [select for diffs], Wed May 4 23:07:00 2022 UTC (8 months, 3 weeks ago) by mef
Branch: MAIN
CVS Tags: pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
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Changes since 1.4: +15 -1
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Diff to previous 1.4 (colored)
(misc/R-Hmisc) TEST_DEPENDS x 9 added, more missing
Revision 1.4 / (download) - annotate - [select for diffs], Mon Apr 25 13:29:17 2022 UTC (9 months ago) by mef
Branch: MAIN
Changes since 1.3: +2 -2
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Diff to previous 1.3 (colored)
(misc/R-Hmisc) Updated 4.2.0 to 4.7.0, fix build against R-4.2.0
Changes in version 4.7-0 (2022-04-18)
* html.contents.data.frame: properly closed html <a>
* simPOcuts: new function to demonstrate variation in odds ratios
due to random chance
* R2Measures: new function to compute various pseudo R^2 measures
* putHcap: added new capabilities around the subsub argument
* print.summary.formula.response: added markdown argument
* knitrSet: added rudimentary quarto support
* knitrSet: sense figure labels of the form fig-... used by Quarto,
and generate correct cross-reference
Changes in version 4.6-0 (2021-10-05)
* package: improved author formatting in DESCRIPTION
* html: markupSpecs$html$session: added citations for any Harrell
packages that are loaded, respecting current output format in
effect with knitr
* soprobMarkovOrdm: new function to compute state occupancy
probabilities from proportion odds model fits
* plotCorrM: new function to graph correlation matrices and gap
time relationships using ggplot2
* ggplotlyr: new function to use plotly::ggplotly to render ggplot2
graphs but intercepting hover text to remove extraneous labels
* Fixed Heiberger email address
* propTrans: removed zero frequency combinations
* combplotp: fixed bug in case regarding recognition of positives
nnn * propsPO: fixed making y factor
* soprobMarkovOrdm: added as.data.frame(generated data)
* estSeqMarkovOrd: extended timecriterion function to allow user to
return the event/censoring time and indicator, and to allow
groupContrast to compute using a variance formula
* estSeqMarkovOrd: trapped errors better, returning attribute
failures, and added maxest and maxvest argument to declare large
parameter or variance estimates as failed iterations; changed
from vgam to vglm and sped up computations by using previous
coefficient estimates as starting values
* session in markupSpecs: added citations for several other packages
* soprobMarkovOrdm: extended to work with VGAM package
* describe: fix error with . (thanks to Cole Beck;
https://github.com/harrelfe/Hmisc/pull/144)
* many: tests for presence of suggested packages using
requireNamespace (thanks for major editing work by Duncan Murdoch
at https://github.com/harrelfe/Hmisc/pull/143 motivated by
https://stat.ethz.ch/pipermail/r-package-devel/2021q2/007101.html)
* mdb.get: fix for Windows by changing from system to system2
(thanks to Rainer Hurling at
https://github.com/harrelfe/Hmisc/pull/135)
* summaryM: fixed error with prN=TRUE with latex (thanks Matt
* Shotwell in https://github.com/harrelfe/Hmisc/pull/109)
* many: fix partial argument matching warnings length ->
* length.out in rep (thanks Bill Denney in
* https://github.com/harrelfe/Hmisc/pull/128)
* rcspline.restate: was dropping + for exactly zero coefficients
(thanks https://github.com/harrelfe/Hmisc/pull/118)
* mdb.get: remove brackets from table names (thanks
https://github.com/harrelfe/Hmisc/pull/123)
* latex: added new argument comment so that the generated comment
can be suppressed (thanks Giuseppe Ragusa
https://github.com/harrelfe/Hmisc/pull/33)
* sas.get: added new argument for variable case (thanks Tyler Hunt
https://github.com/harrelfe/Hmisc/pull/8)
* format.df: changed to use system option OutDec when cdot is not
specified (thanks https://github.com/harrelfe/Hmisc/issues/142)
* C code: changed calls to warning/error routines
* formatdescribeSingle: changed for character value to make 'NA' work
Changes in version 4.5-0 (2021-02-27)
* approxExtrap: changed x and y to as.numeric. Thanks: juha.heikkinen@luke.fi
* upData: fix column subsetting for data.tables
* dotchartpl: intercepted missing Diff
* simMarkovOrd, soprobMarkovOrd, intMarkovOrd, estSeqMarkovOrd: new
functions for Markov proportional odds model simulation and
calculation of state occupancy probabilities
* ggfreqScatter: added by argument
* VGAM package added to Suggests in DESCRIPTION
* html markupSpecs mdchunk: added caption argument, allowed for vectors
* propsTrans: added labels argument for plotly, added numerators
and denominators in tooltips, fixed bug where factor levels were
reversed if odds.ratio specified
Changes in version 4.4-2 (2020-11-25)
* rcorr: captured loss of precision leading to square root of a
negative number. Thanks: Ann Voss <avoss@novanthealth.org>
* summaryS: sapply was doubling names
* pairUpDiff: created for dotchartpl - function to pair up grouped
observations for sorting by descending differences and computing
approximate confidence intervals for the difference given
individual confidence limits
* dotchartpl: added new arguments and functionality to handle
quantities other than proportions (e.g., hazards) and streamlined
code using pairUpDiff
* propsPO: added tooltip text for gpplot that will be transmitted
to ggplotly; reversed order of categories so lowest category put
at bottom of bar
* dotchartpl: suppressed confidence intervals when the number of
groups is not 2; fixed bug where hover text confidence intervals
were repeats of the last computed interval instead of properly
using all the intervals; added dec argument
* added estSeqSim and gbayesSeqSim functions
* ggfreqScatter: stopped varying alpha and just varied color, as
alpha collided with the color scheme
* histSpike: added minimal=TRUE and bins arguments
Changes in version 4.4-1 (2020-08-07)
* popower: added approximate S.E. of log(OR) in results
* propsPO: new function for exploring proportional odds
* propsTrans: new function for showing distributions of successive
state transitions
* changed acepack to suggests
* multEventChart: new function for multi-state event charts based
on code written by Lucy D'Agostino McGowan
* getHdata: changed to use hbiostat.org/data/repo
* markupSpecs$markdown$tof: new function to render a table of
figures with short captions
* knitrSet: added capfile argument to store figure tags and short captions
* getLatestSource: changed to use GitHub and hbiostat.org/R/packagename/dir.txt
* histboxpM: added width argument
* upData: handled zero-length subsets (Thanks: Will Gray)
* upData: made faster for large datasets
* ffCompress: removed from package and put in Github Rscripts
* Changed maintainer email
Changes in version 4.4-0 (2020-03-22)
* combplotp: new function for attribute plots with plotly
* summaryP: made to work with new default stringsAsFactors=FALSE
* plotlyM: fixed bug where need to unlist if only one graph produced
* plotlyM: added ECDF support through fitter='ecdf'
* keepHattrib, restoreHattrib: new functions for saving Hmisc
attributes that can be restored later, e.g., after data.table
processes a data frame
Changes in version 4.3-1 (2020-02-07)
* Depend on survival >= 3.1-6
* pomodm: checked that x is sorted
* markupSpecs: added ord function for ordinal representation of integers
* mChoice: removed unused argument sort. from help file
Changes in version 4.3-0 (2019-11-07)
* Corrected typos in aregImpute help file. Thanks: Mark Seeto.
* describe: changed to print 5 lowest and highest values even if
frequency table printed, added a line of printed output
specifying any rounding done for the frequency table
* vcov.fit.mult.impute: use vcov.orm if object has orm class.
intercepts=mid logic was not working for this
* New service function convertPdate to do automatic date
conversions and handle partial dates such as YYYY and mm/YYYY
with imputation, for cleanup.import
* cleanup.import: new arguments autodate, autonum, fracnn
* describe: formatted dates if there is only one distinct value;
changed to sense date or date-times, for Gmd not format as
date-time
* plot.describe: treated date/time variables as numeric
* cleanup.import: refined autonum considerNA
* ggfreqScatter: added stick=TRUE argument
* markupSpecs: changed math and similar functions to use
... argument instead of x
* summaryDp: new function for plotly dotcharts stratifying
separately on a series of variables
* dotchartpl: added height argument
* html.describe: fixed but where markupSpecs$html utility function
last arguments were not named in calls
Revision 1.3 / (download) - annotate - [select for diffs], Thu Sep 26 22:14:05 2019 UTC (3 years, 4 months ago) by brook
Branch: MAIN
CVS Tags: pkgsrc-2022Q1-base,
pkgsrc-2022Q1,
pkgsrc-2021Q4-base,
pkgsrc-2021Q4,
pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2,
pkgsrc-2021Q1-base,
pkgsrc-2021Q1,
pkgsrc-2020Q4-base,
pkgsrc-2020Q4,
pkgsrc-2020Q3-base,
pkgsrc-2020Q3,
pkgsrc-2020Q2-base,
pkgsrc-2020Q2,
pkgsrc-2020Q1-base,
pkgsrc-2020Q1,
pkgsrc-2019Q4-base,
pkgsrc-2019Q4,
pkgsrc-2019Q3-base,
pkgsrc-2019Q3
Changes since 1.2: +2 -1
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Diff to previous 1.2 (colored)
Add a missing dependency on graphics/R-latticeExtra.
Revision 1.2 / (download) - annotate - [select for diffs], Thu Aug 8 19:53:55 2019 UTC (3 years, 5 months ago) by brook
Branch: MAIN
Changes since 1.1: +4 -6
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Diff to previous 1.1 (colored)
Update all R packages to canonical form. The canonical form [1] of an R package Makefile includes the following: - The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as needed), and CATEGORIES. - HOMEPAGE is not present but defined in math/R/Makefile.extension to refer to the CRAN web page describing the package. Other relevant web pages are often linked from there via the URL field. This updates all current R packages to this form, which will make regular updates _much_ easier, especially using pkgtools/R2pkg. [1] http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html
Revision 1.1 / (download) - annotate - [select for diffs], Wed Jul 31 13:37:02 2019 UTC (3 years, 6 months ago) by brook
Branch: MAIN
R-Hmisc: initial commit. Contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, importing and annotating datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of R objects to LaTeX and html code, and recoding variables.