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CVS log for pkgsrc/math/R-mvtnorm/Makefile

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Default branch: MAIN


Revision 1.17 / (download) - annotate - [select for diffs], Thu Aug 8 19:53:51 2019 UTC (2 months, 1 week ago) by brook
Branch: MAIN
CVS Tags: pkgsrc-2019Q3-base, pkgsrc-2019Q3, HEAD
Changes since 1.16: +4 -6 lines
Diff to previous 1.16 (colored)

Update all R packages to canonical form.

The canonical form [1] of an R package Makefile includes the
following:

- The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as
  needed), and CATEGORIES.

- HOMEPAGE is not present but defined in math/R/Makefile.extension to
  refer to the CRAN web page describing the package.  Other relevant
  web pages are often linked from there via the URL field.

This updates all current R packages to this form, which will make
regular updates _much_ easier, especially using pkgtools/R2pkg.

[1] http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html

Revision 1.16 / (download) - annotate - [select for diffs], Wed Jul 31 19:58:05 2019 UTC (2 months, 2 weeks ago) by brook
Branch: MAIN
Changes since 1.15: +4 -4 lines
Diff to previous 1.15 (colored)

R-mvtnorm: update to version 1.0.11.

Update to the canonical form of an R package.

Revision 1.15 / (download) - annotate - [select for diffs], Thu Aug 30 12:52:22 2018 UTC (13 months, 3 weeks ago) by wen
Branch: MAIN
CVS Tags: pkgsrc-2019Q2-base, pkgsrc-2019Q2, pkgsrc-2019Q1-base, pkgsrc-2019Q1, pkgsrc-2018Q4-base, pkgsrc-2018Q4, pkgsrc-2018Q3-base, pkgsrc-2018Q3
Changes since 1.14: +2 -2 lines
Diff to previous 1.14 (colored)

Update to 1.0.8

Upstream changes:
Changes in version 1.0-8 (2018-05-31)

  o  pmvt(..., sigma = ) was ignored in the univariate case
     (reported by Alec Stephenson)

  o  documentation updates

Changes in version 1.0-7 (2018-01-25)

  o  pmvt(..., df = ) is scalar only

Revision 1.14 / (download) - annotate - [select for diffs], Sat Jul 28 14:40:49 2018 UTC (14 months, 3 weeks ago) by brook
Branch: MAIN
Changes since 1.13: +1 -2 lines
Diff to previous 1.13 (colored)

Remove MASTER_SITES= from individual R package Makefiles.

Each R package should include ../../math/R/Makefile.extension, which also
defines MASTER_SITES.  Consequently, it is redundant for the individual
packages to do the same.  Package-specific definitions also prevent
redefining MASTER_SITES in a single common place.

Revision 1.13 / (download) - annotate - [select for diffs], Thu Jan 25 00:19:52 2018 UTC (20 months, 3 weeks ago) by minskim
Branch: MAIN
CVS Tags: pkgsrc-2018Q2-base, pkgsrc-2018Q2, pkgsrc-2018Q1-base, pkgsrc-2018Q1
Changes since 1.12: +3 -3 lines
Diff to previous 1.12 (colored)

math/R-mvtnorm: Update to 1.0-6

Changes:
- use registered C routines

Revision 1.12 / (download) - annotate - [select for diffs], Wed Apr 13 14:23:29 2016 UTC (3 years, 6 months ago) by wen
Branch: MAIN
CVS Tags: pkgsrc-2017Q4-base, pkgsrc-2017Q4, pkgsrc-2017Q3-base, pkgsrc-2017Q3, pkgsrc-2017Q2-base, pkgsrc-2017Q2, pkgsrc-2017Q1-base, pkgsrc-2017Q1, pkgsrc-2016Q4-base, pkgsrc-2016Q4, pkgsrc-2016Q3-base, pkgsrc-2016Q3, pkgsrc-2016Q2-base, pkgsrc-2016Q2, pkgsrc-
Changes since 1.11: +2 -2 lines
Diff to previous 1.11 (colored)

Update to 1.0.5

Upstream changes:
Changes in version 1.0-5 (2016-02-02)

  o  improvements in quantile estimation

Changes in version 1.0-4 (2016-01-19)

  o  a new algorithm for quantile estimation, again. Quantiles are
     now computed by a stochastic root finding algorithm. Note
     that f.quantile in the output of qmv{t,norm} is now (again)
     the squared difference between the cdf evaluated at the
     quantile and the level. The \code{interval} argument to the
     quantile functions is used as a starting value for the
     root finder when available.

  o  clean-ups in C and R code and documentation

Changes in version 1.0-3 (2015-07-21)

  o  new algorithm for quantile estimation. Quantiles are
     now computed by minimising the squared distance between the
     distribution function and the probability whereas previous versions
     used uniroot(). The procedure is now performed multiple times with
     difference random seeds in order to stabilise the results. The
     \code{interval} argument to the quantile functions is IGNORED now.

Revision 1.11 / (download) - annotate - [select for diffs], Sun May 31 11:57:03 2015 UTC (4 years, 4 months ago) by wen
Branch: MAIN
CVS Tags: pkgsrc-2016Q1-base, pkgsrc-2016Q1, pkgsrc-2015Q4-base, pkgsrc-2015Q4, pkgsrc-2015Q3-base, pkgsrc-2015Q3, pkgsrc-2015Q2-base, pkgsrc-2015Q2
Changes since 1.10: +2 -2 lines
Diff to previous 1.10 (colored)

Update to 1.0.2

Upstream changes:
Changes in version 1.0-2 (2014-12-16)

  o  start providing C interfaces to the underlying algorithms.
     mvtnorm_C_mvtdst() directly calls Alan's FORTRAN code and
     can be used in other packages via LinkingTo. See
     mvtnorm/inst/C_API_Example for an example very much inspired
     by the example provided in package xts.

  o  provide .C interfaces to the FORTRAN routines and allow switching
     on/off of R' RNG.

Changes in version 1.0-1 (2014-11-11)

  o  replace internal MVCHNV FORTRAN FUNCTION with
     R's sqrt(qchisq(p, n, FALSE, FALSE). This fixes a
     problem where NaN was returned as reported by
     David Charles Airey <airey_david_charles_at_lilly.com>

Changes in version 1.0-0 (2014-07-08)

  o  After 14 years, we now feel safe enough to publish mvtnorm 1.0-0.
     Many packages depend, import, or suggest mvtnorm, so this version
     change also indicates that the package is now stable and, to a very
     large extent, the API is frozen. We will of course continue to fix
     bugs or other problems but new features are unlikely to go into this
     package.

  o  use Authors@R in DESCRIPTION

  o  switch to standard NEWS format

Revision 1.10 / (download) - annotate - [select for diffs], Sun Apr 15 15:33:38 2012 UTC (7 years, 6 months ago) by brook
Branch: MAIN
CVS Tags: pkgsrc-2015Q1-base, pkgsrc-2015Q1, pkgsrc-2014Q4-base, pkgsrc-2014Q4, pkgsrc-2014Q3-base, pkgsrc-2014Q3, pkgsrc-2014Q2-base, pkgsrc-2014Q2, pkgsrc-2014Q1-base, pkgsrc-2014Q1, pkgsrc-2013Q4-base, pkgsrc-2013Q4, pkgsrc-2013Q3-base, pkgsrc-2013Q3, pkgsrc-2013Q2-base, pkgsrc-2013Q2, pkgsrc-2013Q1-base, pkgsrc-2013Q1, pkgsrc-2012Q4-base, pkgsrc-2012Q4, pkgsrc-2012Q3-base, pkgsrc-2012Q3, pkgsrc-2012Q2-base, pkgsrc-2012Q2
Changes since 1.9: +3 -2 lines
Diff to previous 1.9 (colored)

Update to mvtnorm v0.9-9992, add LICENSE and regularize package files.

Revision 1.9 / (download) - annotate - [select for diffs], Mon Dec 19 22:27:05 2011 UTC (7 years, 10 months ago) by markd
Branch: MAIN
CVS Tags: pkgsrc-2012Q1-base, pkgsrc-2012Q1, pkgsrc-2011Q4-base, pkgsrc-2011Q4
Changes since 1.8: +2 -2 lines
Diff to previous 1.8 (colored)

s/fortran77/fortran/  - use same fortran as R itself.
No PKGREVISION bump as either this is unchanged or didn't previously build

Revision 1.8 / (download) - annotate - [select for diffs], Fri Jul 30 10:36:26 2010 UTC (9 years, 2 months ago) by asau
Branch: MAIN
CVS Tags: pkgsrc-2011Q3-base, pkgsrc-2011Q3, pkgsrc-2011Q2-base, pkgsrc-2011Q2, pkgsrc-2011Q1-base, pkgsrc-2011Q1, pkgsrc-2010Q4-base, pkgsrc-2010Q4, pkgsrc-2010Q3-base, pkgsrc-2010Q3
Changes since 1.7: +2 -2 lines
Diff to previous 1.7 (colored)

"fortran" -> "fortran77" except where it is clear that it isn't F77.
"fortran" is alias of "fortran77" for now, but it will change later.

Revision 1.7 / (download) - annotate - [select for diffs], Fri Dec 11 19:36:55 2009 UTC (9 years, 10 months ago) by adam
Branch: MAIN
CVS Tags: pkgsrc-2010Q2-base, pkgsrc-2010Q2, pkgsrc-2010Q1-base, pkgsrc-2010Q1, pkgsrc-2009Q4-base, pkgsrc-2009Q4
Changes since 1.6: +3 -4 lines
Diff to previous 1.6 (colored)

Update to the latest version of the module along with R update

Revision 1.6 / (download) - annotate - [select for diffs], Thu Dec 3 13:06:53 2009 UTC (9 years, 10 months ago) by asau
Branch: MAIN
Changes since 1.5: +2 -1 lines
Diff to previous 1.5 (colored)

Follow f2c/libf2c split: bump revision of all packages
that list Fortran in used languages.

Revision 1.5 / (download) - annotate - [select for diffs], Tue Oct 14 05:47:36 2008 UTC (11 years ago) by markd
Branch: MAIN
CVS Tags: pkgsrc-2009Q3-base, pkgsrc-2009Q3, pkgsrc-2009Q2-base, pkgsrc-2009Q2, pkgsrc-2009Q1-base, pkgsrc-2009Q1, pkgsrc-2008Q4-base, pkgsrc-2008Q4
Changes since 1.4: +3 -3 lines
Diff to previous 1.4 (colored)

Update R-mvtnorm to 0.9.2

Changes unknown.

Revision 1.4 / (download) - annotate - [select for diffs], Thu Feb 22 19:30:05 2007 UTC (12 years, 8 months ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2008Q3-base, pkgsrc-2008Q3, pkgsrc-2008Q2-base, pkgsrc-2008Q2, pkgsrc-2008Q1-base, pkgsrc-2008Q1, pkgsrc-2007Q4-base, pkgsrc-2007Q4, pkgsrc-2007Q3-base, pkgsrc-2007Q3, pkgsrc-2007Q2-base, pkgsrc-2007Q2, pkgsrc-2007Q1-base, pkgsrc-2007Q1, cwrapper, cube-native-xorg-base, cube-native-xorg
Changes since 1.3: +2 -2 lines
Diff to previous 1.3 (colored)

pkglint USE_LANGUAGES cleanup. Patch from Sergey Svishchev.

Revision 1.3 / (download) - annotate - [select for diffs], Tue Aug 22 18:57:01 2006 UTC (13 years, 2 months ago) by joerg
Branch: MAIN
CVS Tags: pkgsrc-2006Q4-base, pkgsrc-2006Q4, pkgsrc-2006Q3-base, pkgsrc-2006Q3
Changes since 1.2: +2 -2 lines
Diff to previous 1.2 (colored)

On DragonFly, cc is used for the Fortran linking so
require C as language.

Revision 1.2 / (download) - annotate - [select for diffs], Thu Jul 20 21:04:32 2006 UTC (13 years, 3 months ago) by wiz
Branch: MAIN
Changes since 1.1: +2 -1 lines
Diff to previous 1.1 (colored)

Needs fortran.

Revision 1.1.1.1 / (download) - annotate - [select for diffs] (vendor branch), Sun Jul 2 13:09:22 2006 UTC (13 years, 3 months ago) by markd
Branch: TNF
CVS Tags: pkgsrc-base
Changes since 1.1: +0 -0 lines
Diff to previous 1.1 (colored)

Initial import R-mvtnorm 0.7.2

Computes the multivariate normal and t distribution

Revision 1.1 / (download) - annotate - [select for diffs], Sun Jul 2 13:09:22 2006 UTC (13 years, 3 months ago) by markd
Branch: MAIN

Initial revision

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