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Revision 1.6 / (download) - annotate - [select for diffs], Thu Aug 8 19:53:50 2019 UTC (6 weeks, 1 day ago) by brook
CVS Tags: HEAD
Changes since 1.5: +4 -6 lines
Diff to previous 1.5 (colored)
Update all R packages to canonical form. The canonical form  of an R package Makefile includes the following: - The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as needed), and CATEGORIES. - HOMEPAGE is not present but defined in math/R/Makefile.extension to refer to the CRAN web page describing the package. Other relevant web pages are often linked from there via the URL field. This updates all current R packages to this form, which will make regular updates _much_ easier, especially using pkgtools/R2pkg.  http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html
Revision 1.5 / (download) - annotate - [selected], Wed Jul 31 19:49:55 2019 UTC (7 weeks, 2 days ago) by brook
Changes since 1.4: +6 -7 lines
Diff to previous 1.4 (colored)
R-lme4: update to version 1.1.21. Update to the canonical form of an R package and fix the LICENSE field.
Revision 1.4 / (download) - annotate - [select for diffs], Fri Dec 21 12:53:49 2018 UTC (8 months, 4 weeks ago) by wen
CVS Tags: pkgsrc-2019Q2-base, pkgsrc-2019Q2, pkgsrc-2019Q1-base, pkgsrc-2019Q1, pkgsrc-2018Q4-base, pkgsrc-2018Q4
Changes since 1.3: +2 -2 lines
Diff to previous 1.3 (colored) to selected 1.5 (colored)
Update to 1.1.19 Upstream changes: CHANGES IN VERSION 1.1-19 NEW FEATURES influence measure code from car rolled in (see ?influence.merMod) mkReTrm gets new arguments reorder.terms, reorder.vars to control arrangement of RE terms and individual effects with RE terms within model structures adding material from the RePsychLing package (on GitHub; see Bates et al 2015 arXiv:1506.04967) to show orthogonal variance components. USER-VISIBLE CHANGES as.data.frame.merMod finds conditional variance information stored either as attr(.,"postVar") or attr(.,"condVar") (for glmmTMB compatibility) change to defaults of [g]lmerControl to print a message when fits are singular new utility isSingular() function for detecting singular fits; by default a message is printed for singular fits allFit function/methods have been moved to the main package, rather than being included in an auxiliary source file post-fitting convergence checks based on estimated gradient and Hessian (see troubleshooting) are no longer performed for (nearly-)singular fits (see isSingular) CHANGES IN VERSION 1.1-18-1 (2018-08-17) This is a minor release; the only change is to roll back (unexport) the influence.merMod method, pending resolution of conflicts with the car package CHANGES IN VERSION 1.1-18 ((2018-08-16) USER-VISIBLE CHANGES ranef(.,condVar=TRUE) now works when there are multiple random effects terms per factor NEW FEATURES rstudent and influence methods are available for merMod objects devfun2 function (for generating a deviance function that works on the standard deviation/correlation scale) is now exported BUG FIXES lmList now obeys its pool argument (instead of always using what currently is the default, GH #476) CHANGES IN VERSION 1.1-17 (2018-04-03) This is a maintenance release only (fixes CRAN problems with cross-platform tests and examples) CHANGES IN VERSION 1.1-16 (2018-03-28) BUG FIXES lmList no longer ignores the subset argument (John Fox) fixed several minor issues with predicting when (1) grouping variables have different levels from original model (e.g. missing levels/factor levels not explicitly specified in newdata) or (2) re.form is a subset of the original RE formula and some (unused) grouping variables are omitted from newdata (GH #452, #457) USER-VISIBLE CHANGES lmList tries harder to collect errors and pass them on as warnings documented as.function method (given a merMod object, returns a function that computes the deviance/REML criterion for specified parameters) print method for summary.merMod objects no longer collapses small values of the t-statistic to zero
Revision 1.3 / (download) - annotate - [select for diffs], Sat Jul 28 14:40:49 2018 UTC (13 months, 3 weeks ago) by brook
CVS Tags: pkgsrc-2018Q3-base, pkgsrc-2018Q3
Changes since 1.2: +1 -2 lines
Diff to previous 1.2 (colored) to selected 1.5 (colored)
Remove MASTER_SITES= from individual R package Makefiles. Each R package should include ../../math/R/Makefile.extension, which also defines MASTER_SITES. Consequently, it is redundant for the individual packages to do the same. Package-specific definitions also prevent redefining MASTER_SITES in a single common place.
Revision 1.2 / (download) - annotate - [select for diffs], Mon Jan 22 03:27:45 2018 UTC (19 months, 4 weeks ago) by wen
CVS Tags: pkgsrc-2018Q2-base, pkgsrc-2018Q2, pkgsrc-2018Q1-base, pkgsrc-2018Q1
Changes since 1.1: +1 -2 lines
Diff to previous 1.1 (colored) to selected 1.5 (colored)
Remove an unneeded line
Revision 1.1 / (download) - annotate - [select for diffs], Mon Jan 22 03:16:11 2018 UTC (19 months, 4 weeks ago) by wen
Diff to selected 1.5 (colored)
Import lme4-1.1.15 as math/R-lme4. Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the Eigen C++ library for numerical linear algebra and RcppEigen "glue".
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