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CVS log for pkgsrc/math/R-e1071/distinfo

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Revision 1.16: download - view: text, markup, annotated - select for diffs
Sat Nov 2 00:26:24 2024 UTC (5 months, 2 weeks ago) by mef
Branches: MAIN
CVS tags: pkgsrc-2025Q1-base, pkgsrc-2025Q1, pkgsrc-2024Q4-base, pkgsrc-2024Q4, HEAD
Diff to: previous 1.15: preferred, colored
Changes since revision 1.15: +4 -4 lines
(math/R-e1071) Updated 1.7.14 to 1.7.16

Changes in version 1.7-16:

        * fix bug in svmdoc vignette

        * fix possible glitch in svm.cpp regarding memory allocation

Changes in version 1.7-15:

        * fix bug in 'read.matrix.csr()'

Revision 1.15: download - view: text, markup, annotated - select for diffs
Fri Jan 26 10:55:59 2024 UTC (14 months, 3 weeks ago) by mef
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base, pkgsrc-2024Q3, pkgsrc-2024Q2-base, pkgsrc-2024Q2, pkgsrc-2024Q1-base, pkgsrc-2024Q1
Diff to: previous 1.14: preferred, colored
Changes since revision 1.14: +4 -4 lines
(math/R-e1071) Updated 1.7.13 to 1.7.14

Changes in version 1.7-14:

        - fix incomplete arguments to avoid partial matches

        - fix small bug in svm.cpp (Rprintf() wrongly called)

        - fix predict.gknn() and predict.svn() to allow for
          newdata argument with character variables instead of
          factors (levels are taken from original data).

Revision 1.14: download - view: text, markup, annotated - select for diffs
Sun Feb 12 04:16:32 2023 UTC (2 years, 2 months ago) by mef
Branches: MAIN
CVS tags: pkgsrc-2023Q4-base, pkgsrc-2023Q4, pkgsrc-2023Q3-base, pkgsrc-2023Q3, pkgsrc-2023Q2-base, pkgsrc-2023Q2, pkgsrc-2023Q1-base, pkgsrc-2023Q1
Diff to: previous 1.13: preferred, colored
Changes since revision 1.13: +4 -4 lines
(math/R-e1071) Updated 1.7.11 to 1.7.12

( R CMD Rdconv -t txt /tmp/math/R-e1071/work/e1071/inst/NEWS.Rd |head -20)
News for Package 'e1071'

Changes in version 1.7-12:

        * add ORCID ids

Changes in version 1.7-12:

        * add 'tune.gknn()' wrapper

Revision 1.13: download - view: text, markup, annotated - select for diffs
Sun Dec 18 11:20:43 2022 UTC (2 years, 4 months ago) by mef
Branches: MAIN
CVS tags: pkgsrc-2022Q4-base, pkgsrc-2022Q4
Diff to: previous 1.12: preferred, colored
Changes since revision 1.12: +4 -4 lines
(math/R-e1071) Updated 1.7.9 to 1.7.12

(R CMD Rdconv -t txt math/R-e1071/work/e1071/inst/NEWS.Rd |head -20)

Changes in version 1.7-12:

        * add 'tune.gknn()' wrapper

Changes in version 1.7-11:

        * cosmetic changes

Changes in version 1.7-10:

        * small fix in 'coef.svm' for sparse data

Revision 1.12: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:55:26 2021 UTC (3 years, 5 months ago) by nia
Branches: MAIN
CVS tags: pkgsrc-2022Q3-base, pkgsrc-2022Q3, pkgsrc-2022Q2-base, pkgsrc-2022Q2, pkgsrc-2022Q1-base, pkgsrc-2022Q1, pkgsrc-2021Q4-base, pkgsrc-2021Q4
Diff to: previous 1.11: preferred, colored
Changes since revision 1.11: +2 -2 lines
math: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes

Revision 1.11: download - view: text, markup, annotated - select for diffs
Thu Oct 7 14:27:48 2021 UTC (3 years, 6 months ago) by nia
Branches: MAIN
Diff to: previous 1.10: preferred, colored
Changes since revision 1.10: +1 -2 lines
math: Remove SHA1 hashes for distfiles

Revision 1.10: download - view: text, markup, annotated - select for diffs
Sun Sep 19 08:40:57 2021 UTC (3 years, 6 months ago) by mef
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base, pkgsrc-2021Q3
Diff to: previous 1.9: preferred, colored
Changes since revision 1.9: +5 -5 lines
(math/R-e1071) Updated 1.7.8 to 1.7.9

(R CMD Rdconv -t txt math/R-e1071/work/e1071/inst/NEWS.Rd)
Changes in version 1.7-9:
  * Remove configure code testing for gcc 2.96.

Revision 1.9: download - view: text, markup, annotated - select for diffs
Thu Sep 16 04:16:47 2021 UTC (3 years, 7 months ago) by mef
Branches: MAIN
Diff to: previous 1.8: preferred, colored
Changes since revision 1.8: +5 -5 lines
(math/R-e1071) Updated 1.7.2 to 1.7.8

(by  R CMD Rdconv -t txt math/R-e1071/work/e1071/inst/NEWS.Rd)

Changes in version 1.7-8:

        * Bugfixes in 'gknn()': wrong behavior in case of tied
          k-nearest neighbors (for 'use_all=TRUE'), and also in case of
          an overall class tie.

Changes in version 1.7-7:

        * Bugfix in examples of 'cshell()'

Changes in version 1.7-6:

        * Bugfix in 'scale_data_frame()' - now calls 'scale()' if x is
          not a data frame.

Changes in version 1.7-5:

        * NaiveBayes: better handling od character and logical features

        * Added: 'gknn()' for generalized k-Nearest Neighbours (using
          arbitrary proximity measures)

        * Added: 'scale_data_frame()' for scaling the numeric columns
          of a data frame.

Changes in version 1.7-4:

        * Bug fix: "inverse" argument for class.weights argument in
          'svm.default()' did not work

Revision 1.8: download - view: text, markup, annotated - select for diffs
Wed Jul 31 19:21:32 2019 UTC (5 years, 8 months ago) by brook
Branches: MAIN
CVS tags: pkgsrc-2021Q2-base, pkgsrc-2021Q2, pkgsrc-2021Q1-base, pkgsrc-2021Q1, pkgsrc-2020Q4-base, pkgsrc-2020Q4, pkgsrc-2020Q3-base, pkgsrc-2020Q3, pkgsrc-2020Q2-base, pkgsrc-2020Q2, pkgsrc-2020Q1-base, pkgsrc-2020Q1, pkgsrc-2019Q4-base, pkgsrc-2019Q4, pkgsrc-2019Q3-base, pkgsrc-2019Q3
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +5 -5 lines
R-e1071: update to version 1.7.2.

Update to the canonical form of an R package and fix the LICENSE
field.

Revision 1.7: download - view: text, markup, annotated - select for diffs
Wed Jan 17 18:43:10 2018 UTC (7 years, 3 months ago) by minskim
Branches: MAIN
CVS tags: pkgsrc-2019Q2-base, pkgsrc-2019Q2, pkgsrc-2019Q1-base, pkgsrc-2019Q1, pkgsrc-2018Q4-base, pkgsrc-2018Q4, pkgsrc-2018Q3-base, pkgsrc-2018Q3, pkgsrc-2018Q2-base, pkgsrc-2018Q2, pkgsrc-2018Q1-base, pkgsrc-2018Q1
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +5 -5 lines
math/R-e1071: Update to 1.6-8

Changes:

- add and use native symbols for C-code
- naiveBayes() now supports logical variables

Revision 1.6: download - view: text, markup, annotated - select for diffs
Fri Jan 1 12:03:03 2016 UTC (9 years, 3 months ago) by wen
Branches: MAIN
CVS tags: pkgsrc-2017Q4-base, pkgsrc-2017Q4, pkgsrc-2017Q3-base, pkgsrc-2017Q3, pkgsrc-2017Q2-base, pkgsrc-2017Q2, pkgsrc-2017Q1-base, pkgsrc-2017Q1, pkgsrc-2016Q4-base, pkgsrc-2016Q4, pkgsrc-2016Q3-base, pkgsrc-2016Q3, pkgsrc-2016Q2-base, pkgsrc-2016Q2, pkgsrc-2016Q1-base, pkgsrc-2016Q1
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +5 -5 lines
Update to 1.6.7

Upstream changes:
Changes in version 1.6-7

    fix some bug in handling weights in svm.default

Changes in version 1.6-6

    fix numeric issue in classAgreement()

    add functions from recommended packages to NAMESPACE

    fix bug in svm.default (incorrect handling of subset= argument)

    fix bug in predict.svm (new data with NA in response got removed)

    residuals are now correctly computed for regression in case of scaled data

Changes in version 1.6-5

    hamming.distance() no longer converts input to binary

    tune() now uses mean() to aggregate error measures from cross-fold replications

Changes in version 1.6-4

    remove library("SparseM") statements in code, use namespace semantics instead

    Fix memory leak and uninitialized read error in write.svm()

    add warning in predict.svm() if probabilities should be predicted, but the model was not trained with probability = TRUE

    add eps to laplace smoothing in predict.naiveBayes() to account for close-zero probabilities also.

    use R's random number generator for cross-validation and probability computation instead of the system one.

Changes in version 1.6-3

    remove require() statements and dependency on stats

Changes in version 1.6-2

    vignettes moved to vignettes folder.

    libsvm upgrade to version 3.17, getting rid of stdout and stderr

Revision 1.5: download - view: text, markup, annotated - select for diffs
Tue Nov 3 23:33:28 2015 UTC (9 years, 5 months ago) by agc
Branches: MAIN
CVS tags: pkgsrc-2015Q4-base, pkgsrc-2015Q4
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +2 -1 lines
Add SHA512 digests for distfiles for math category

Problems found locating distfiles:
	Package dfftpack: missing distfile dfftpack-20001209.tar.gz
	Package eispack: missing distfile eispack-20001130.tar.gz
	Package fftpack: missing distfile fftpack-20001130.tar.gz
	Package linpack: missing distfile linpack-20010510.tar.gz
	Package minpack: missing distfile minpack-20001130.tar.gz
	Package odepack: missing distfile odepack-20001130.tar.gz
	Package py-networkx: missing distfile networkx-1.10.tar.gz
	Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
	Package quadpack: missing distfile quadpack-20001130.tar.gz

Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden).  All existing
SHA1 digests retained for now as an audit trail.

Revision 1.4: download - view: text, markup, annotated - select for diffs
Thu Aug 15 09:34:23 2013 UTC (11 years, 8 months ago) by wen
Branches: MAIN
CVS tags: pkgsrc-2015Q3-base, pkgsrc-2015Q3, pkgsrc-2015Q2-base, pkgsrc-2015Q2, pkgsrc-2015Q1-base, pkgsrc-2015Q1, pkgsrc-2014Q4-base, pkgsrc-2014Q4, pkgsrc-2014Q3-base, pkgsrc-2014Q3, pkgsrc-2014Q2-base, pkgsrc-2014Q2, pkgsrc-2014Q1-base, pkgsrc-2014Q1, pkgsrc-2013Q4-base, pkgsrc-2013Q4, pkgsrc-2013Q3-base, pkgsrc-2013Q3
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +4 -4 lines
Update to 1.6.1

Upstream changes:
Changes in version 1.6-1

write.matrix.csr() now accepts a fac argument similar to read.matrix.csr(), writing factor levels instead of the numeric codes.

naiveBayes() uses a numerically more stable formula for calculating the a-posterior probabilities.

predict.naiveBayes() now accepts data with predictors in an order different from the training data, and also ignores variables not in the model (especially the response variable).

svm() checks whether parameters which are passed to the C-code are set to NULL to avoid segfaults.

Revision 1.3: download - view: text, markup, annotated - select for diffs
Sun Apr 15 15:25:09 2012 UTC (13 years ago) by brook
Branches: MAIN
CVS tags: pkgsrc-2013Q2-base, pkgsrc-2013Q2, pkgsrc-2013Q1-base, pkgsrc-2013Q1, pkgsrc-2012Q4-base, pkgsrc-2012Q4, pkgsrc-2012Q3-base, pkgsrc-2012Q3, pkgsrc-2012Q2-base, pkgsrc-2012Q2
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +4 -4 lines
Update to e1071 v1.6, add LICENSE and regularize package files.

Revision 1.2: download - view: text, markup, annotated - select for diffs
Sat Jul 3 07:25:57 2010 UTC (14 years, 9 months ago) by adam
Branches: MAIN
CVS tags: pkgsrc-2012Q1-base, pkgsrc-2012Q1, pkgsrc-2011Q4-base, pkgsrc-2011Q4, pkgsrc-2011Q3-base, pkgsrc-2011Q3, pkgsrc-2011Q2-base, pkgsrc-2011Q2, pkgsrc-2011Q1-base, pkgsrc-2011Q1, pkgsrc-2010Q4-base, pkgsrc-2010Q4, pkgsrc-2010Q3-base, pkgsrc-2010Q3
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +4 -4 lines
Changes 2.11.1:

* R CMD INSTALL checks if dependent packages are available early on
* in the installation of source packages, thereby giving clearer
  error messages.
* R CMD INSTALL --build now names the file in the format used
  for Mac OS X binary files on that platform.
* BIC() in package stats4 now also works with multiple fitted models,
  analogously to AIC().
* Use of file extension .C for C++ code in packages is now
  deprecated: it has caused problems for some 'make's on
  case-insensitive file systems (although it currently works
  with the recommended toolkits).
* The C function mkCharLenCE now no longer reads past 'len' bytes
  (unlikely to be a problem except in user code).
* On systems without any default LD_LIBRARY_PATH (not even
  /usr/local/lib), [DY]LIB_LIBRARY_PATH is now set without a trailing colon.
* More efficient utf8ToInt() on long multi-byte strings with
  many multi-byte characters.
* aggregate.ts() gave platform-depedent results due to rounding
  error for ndeltat != 1.
* package.skeleton() sometimes failed to fix filenames for .R or
  .Rd files to start with an alphanumeric.

Revision 1.1.1.1 (vendor branch): download - view: text, markup, annotated - select for diffs
Fri Dec 11 19:09:46 2009 UTC (15 years, 4 months ago) by adam
Branches: TNF
CVS tags: pkgsrc-base, pkgsrc-2010Q2-base, pkgsrc-2010Q2, pkgsrc-2010Q1-base, pkgsrc-2010Q1, pkgsrc-2009Q4-base, pkgsrc-2009Q4
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +0 -0 lines
Functions for latent class analysis, short time Fourier transform, fuzzy
clustering, support vector machines, shortest path computation, bagged
clustering, naive Bayes classifier, ...

Revision 1.1: download - view: text, markup, annotated - select for diffs
Fri Dec 11 19:09:46 2009 UTC (15 years, 4 months ago) by adam
Branches: MAIN
Initial revision

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