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CVS log for pkgsrc/math/R-e1071/Makefile

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Default branch: MAIN

Revision 1.10 / (download) - annotate - [select for diffs], Thu Aug 8 19:53:48 2019 UTC (8 days, 21 hours ago) by brook
Branch: MAIN
Changes since 1.9: +4 -6 lines
Diff to previous 1.9 (colored)

Update all R packages to canonical form.

The canonical form [1] of an R package Makefile includes the

- The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as
  needed), and CATEGORIES.

- HOMEPAGE is not present but defined in math/R/Makefile.extension to
  refer to the CRAN web page describing the package.  Other relevant
  web pages are often linked from there via the URL field.

This updates all current R packages to this form, which will make
regular updates _much_ easier, especially using pkgtools/R2pkg.


Revision 1.9 / (download) - annotate - [select for diffs], Wed Jul 31 19:21:32 2019 UTC (2 weeks, 2 days ago) by brook
Branch: MAIN
Changes since 1.8: +4 -4 lines
Diff to previous 1.8 (colored)

R-e1071: update to version 1.7.2.

Update to the canonical form of an R package and fix the LICENSE

Revision 1.8 / (download) - annotate - [select for diffs], Sat Jul 28 14:40:47 2018 UTC (12 months, 2 weeks ago) by brook
Branch: MAIN
CVS Tags: pkgsrc-2019Q2-base, pkgsrc-2019Q2, pkgsrc-2019Q1-base, pkgsrc-2019Q1, pkgsrc-2018Q4-base, pkgsrc-2018Q4, pkgsrc-2018Q3-base, pkgsrc-2018Q3
Changes since 1.7: +1 -2 lines
Diff to previous 1.7 (colored)

Remove MASTER_SITES= from individual R package Makefiles.

Each R package should include ../../math/R/Makefile.extension, which also
defines MASTER_SITES.  Consequently, it is redundant for the individual
packages to do the same.  Package-specific definitions also prevent
redefining MASTER_SITES in a single common place.

Revision 1.7 / (download) - annotate - [select for diffs], Wed Jan 17 18:43:10 2018 UTC (18 months, 4 weeks ago) by minskim
Branch: MAIN
CVS Tags: pkgsrc-2018Q2-base, pkgsrc-2018Q2, pkgsrc-2018Q1-base, pkgsrc-2018Q1
Changes since 1.6: +2 -2 lines
Diff to previous 1.6 (colored)

math/R-e1071: Update to 1.6-8


- add and use native symbols for C-code
- naiveBayes() now supports logical variables

Revision 1.6 / (download) - annotate - [select for diffs], Fri Sep 8 06:24:30 2017 UTC (23 months, 1 week ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2017Q4-base, pkgsrc-2017Q4, pkgsrc-2017Q3-base, pkgsrc-2017Q3, pkgsrc-
Changes since 1.5: +2 -2 lines
Diff to previous 1.5 (colored)


Revision 1.5 / (download) - annotate - [select for diffs], Fri Jan 1 12:03:03 2016 UTC (3 years, 7 months ago) by wen
Branch: MAIN
CVS Tags: pkgsrc-2017Q2-base, pkgsrc-2017Q2, pkgsrc-2017Q1-base, pkgsrc-2017Q1, pkgsrc-2016Q4-base, pkgsrc-2016Q4, pkgsrc-2016Q3-base, pkgsrc-2016Q3, pkgsrc-2016Q2-base, pkgsrc-2016Q2, pkgsrc-2016Q1-base, pkgsrc-2016Q1
Changes since 1.4: +2 -2 lines
Diff to previous 1.4 (colored)

Update to 1.6.7

Upstream changes:
Changes in version 1.6-7

    fix some bug in handling weights in svm.default

Changes in version 1.6-6

    fix numeric issue in classAgreement()

    add functions from recommended packages to NAMESPACE

    fix bug in svm.default (incorrect handling of subset= argument)

    fix bug in predict.svm (new data with NA in response got removed)

    residuals are now correctly computed for regression in case of scaled data

Changes in version 1.6-5

    hamming.distance() no longer converts input to binary

    tune() now uses mean() to aggregate error measures from cross-fold replications

Changes in version 1.6-4

    remove library("SparseM") statements in code, use namespace semantics instead

    Fix memory leak and uninitialized read error in write.svm()

    add warning in predict.svm() if probabilities should be predicted, but the model was not trained with probability = TRUE

    add eps to laplace smoothing in predict.naiveBayes() to account for close-zero probabilities also.

    use R's random number generator for cross-validation and probability computation instead of the system one.

Changes in version 1.6-3

    remove require() statements and dependency on stats

Changes in version 1.6-2

    vignettes moved to vignettes folder.

    libsvm upgrade to version 3.17, getting rid of stdout and stderr

Revision 1.4 / (download) - annotate - [select for diffs], Thu Aug 15 09:34:23 2013 UTC (6 years ago) by wen
Branch: MAIN
CVS Tags: pkgsrc-2015Q4-base, pkgsrc-2015Q4, pkgsrc-2015Q3-base, pkgsrc-2015Q3, pkgsrc-2015Q2-base, pkgsrc-2015Q2, pkgsrc-2015Q1-base, pkgsrc-2015Q1, pkgsrc-2014Q4-base, pkgsrc-2014Q4, pkgsrc-2014Q3-base, pkgsrc-2014Q3, pkgsrc-2014Q2-base, pkgsrc-2014Q2, pkgsrc-2014Q1-base, pkgsrc-2014Q1, pkgsrc-2013Q4-base, pkgsrc-2013Q4, pkgsrc-2013Q3-base, pkgsrc-2013Q3
Changes since 1.3: +2 -2 lines
Diff to previous 1.3 (colored)

Update to 1.6.1

Upstream changes:
Changes in version 1.6-1

write.matrix.csr() now accepts a fac argument similar to read.matrix.csr(), writing factor levels instead of the numeric codes.

naiveBayes() uses a numerically more stable formula for calculating the a-posterior probabilities.

predict.naiveBayes() now accepts data with predictors in an order different from the training data, and also ignores variables not in the model (especially the response variable).

svm() checks whether parameters which are passed to the C-code are set to NULL to avoid segfaults.

Revision 1.3 / (download) - annotate - [select for diffs], Sun Apr 15 15:25:09 2012 UTC (7 years, 4 months ago) by brook
Branch: MAIN
CVS Tags: pkgsrc-2013Q2-base, pkgsrc-2013Q2, pkgsrc-2013Q1-base, pkgsrc-2013Q1, pkgsrc-2012Q4-base, pkgsrc-2012Q4, pkgsrc-2012Q3-base, pkgsrc-2012Q3, pkgsrc-2012Q2-base, pkgsrc-2012Q2
Changes since 1.2: +5 -4 lines
Diff to previous 1.2 (colored)

Update to e1071 v1.6, add LICENSE and regularize package files.

Revision 1.2 / (download) - annotate - [select for diffs], Sat Jul 3 07:25:57 2010 UTC (9 years, 1 month ago) by adam
Branch: MAIN
CVS Tags: pkgsrc-2012Q1-base, pkgsrc-2012Q1, pkgsrc-2011Q4-base, pkgsrc-2011Q4, pkgsrc-2011Q3-base, pkgsrc-2011Q3, pkgsrc-2011Q2-base, pkgsrc-2011Q2, pkgsrc-2011Q1-base, pkgsrc-2011Q1, pkgsrc-2010Q4-base, pkgsrc-2010Q4, pkgsrc-2010Q3-base, pkgsrc-2010Q3
Changes since 1.1: +2 -2 lines
Diff to previous 1.1 (colored)

Changes 2.11.1:

* R CMD INSTALL checks if dependent packages are available early on
* in the installation of source packages, thereby giving clearer
  error messages.
* R CMD INSTALL --build now names the file in the format used
  for Mac OS X binary files on that platform.
* BIC() in package stats4 now also works with multiple fitted models,
  analogously to AIC().
* Use of file extension .C for C++ code in packages is now
  deprecated: it has caused problems for some 'make's on
  case-insensitive file systems (although it currently works
  with the recommended toolkits).
* The C function mkCharLenCE now no longer reads past 'len' bytes
  (unlikely to be a problem except in user code).
* On systems without any default LD_LIBRARY_PATH (not even
  /usr/local/lib), [DY]LIB_LIBRARY_PATH is now set without a trailing colon.
* More efficient utf8ToInt() on long multi-byte strings with
  many multi-byte characters.
* aggregate.ts() gave platform-depedent results due to rounding
  error for ndeltat != 1.
* package.skeleton() sometimes failed to fix filenames for .R or
  .Rd files to start with an alphanumeric.

Revision / (download) - annotate - [select for diffs] (vendor branch), Fri Dec 11 19:09:46 2009 UTC (9 years, 8 months ago) by adam
Branch: TNF
CVS Tags: pkgsrc-base, pkgsrc-2010Q2-base, pkgsrc-2010Q2, pkgsrc-2010Q1-base, pkgsrc-2010Q1, pkgsrc-2009Q4-base, pkgsrc-2009Q4
Changes since 1.1: +0 -0 lines
Diff to previous 1.1 (colored)

Functions for latent class analysis, short time Fourier transform, fuzzy
clustering, support vector machines, shortest path computation, bagged
clustering, naive Bayes classifier, ...

Revision 1.1 / (download) - annotate - [select for diffs], Fri Dec 11 19:09:46 2009 UTC (9 years, 8 months ago) by adam
Branch: MAIN

Initial revision

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