CVS log for pkgsrc/biology/vsearch/distinfo
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Up to [cvs.NetBSD.org] / pkgsrc / biology / vsearch
Request diff between arbitrary revisions
Keyword substitution: kv
Default branch: MAIN
Revision 1.13: download - view: text, markup, annotated - select for diffs
Mon Oct 21 20:26:13 2024 UTC (7 weeks ago) by bacon
Branches: MAIN
CVS tags: HEAD
Diff to: previous 1.12: preferred, colored
Changes since revision 1.12: +3 -3
lines
biology/vsearch: Update to 2.29.0
Several bug fixes
Support for RISC-V
Improved testing
Changes: https://github.com/torognes/vsearch/releases
Reported by: portscout
Revision 1.12: download - view: text, markup, annotated - select for diffs
Mon Apr 8 21:53:32 2024 UTC (8 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
pkgsrc-2024Q2-base,
pkgsrc-2024Q2
Diff to: previous 1.11: preferred, colored
Changes since revision 1.11: +3 -3
lines
biology/vsearch: Update to 2.27.1
Fix weak_id option and make searches report weak hits in some cases
Changes: https://github.com/torognes/vsearch/releases
Reported by: portscout
Revision 1.11: download - view: text, markup, annotated - select for diffs
Tue Jan 23 13:26:59 2024 UTC (10 months, 2 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q1-base,
pkgsrc-2024Q1
Diff to: previous 1.10: preferred, colored
Changes since revision 1.10: +3 -3
lines
biology/vsearch: Update to 2.27.0
Add FASTQ support to usearch_global and search_exact
Code cleanup and manual clarifications
Changes: https://github.com/torognes/vsearch/releases
Reported by: portscout
Revision 1.10: download - view: text, markup, annotated - select for diffs
Sun Nov 26 12:35:56 2023 UTC (12 months, 2 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q4-base,
pkgsrc-2023Q4
Diff to: previous 1.9: preferred, colored
Changes since revision 1.9: +3 -3
lines
biology/vsearch: Update to 2.26.1
A few minor enhancements
Changes: https://github.com/torognes/vsearch/releases
Revision 1.9: download - view: text, markup, annotated - select for diffs
Sun Nov 12 15:32:12 2023 UTC (12 months, 4 weeks ago) by bacon
Branches: MAIN
Diff to: previous 1.8: preferred, colored
Changes since revision 1.8: +3 -3
lines
biology/vsearch: Update to 2.25.0
chimeras_denovo: Allow user to specify mismatch tolerance
Changes: https://github.com/torognes/vsearch/releases
Revision 1.8: download - view: text, markup, annotated - select for diffs
Fri Oct 27 14:15:38 2023 UTC (13 months, 2 weeks ago) by bacon
Branches: MAIN
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +3 -3
lines
biology/vsearch: Update to 2.24.0
Upstream code cleanup
Changes: https://github.com/torognes/vsearch/releases
Revision 1.7: download - view: text, markup, annotated - select for diffs
Sun Jul 9 16:20:58 2023 UTC (17 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q3-base,
pkgsrc-2023Q3
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +3 -5
lines
biology/vsearch: Update to 2.23.0
Numerous minor fixes and enhancements
Changes: https://github.com/torognes/vsearch/releases
Revision 1.6: download - view: text, markup, annotated - select for diffs
Fri Dec 17 19:20:44 2021 UTC (2 years, 11 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q2-base,
pkgsrc-2023Q2,
pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2,
pkgsrc-2022Q1-base,
pkgsrc-2022Q1,
pkgsrc-2021Q4-base,
pkgsrc-2021Q4
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +6 -7
lines
biology/vsearch: Update to 2.18.0
Add powerpc64 support
Numerous fixes and enhancements since 2.13
Changes: https://github.com/torognes/vsearch/tags
Revision 1.5: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:03:44 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +2 -2
lines
biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
Revision 1.4: download - view: text, markup, annotated - select for diffs
Thu Oct 7 13:19:44 2021 UTC (3 years, 2 months ago) by nia
Branches: MAIN
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +1 -2
lines
biology: Remove SHA1 hashes for distfiles
Revision 1.3: download - view: text, markup, annotated - select for diffs
Thu Mar 26 02:37:38 2020 UTC (4 years, 8 months ago) by joerg
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2,
pkgsrc-2021Q1-base,
pkgsrc-2021Q1,
pkgsrc-2020Q4-base,
pkgsrc-2020Q4,
pkgsrc-2020Q3-base,
pkgsrc-2020Q3,
pkgsrc-2020Q2-base,
pkgsrc-2020Q2,
pkgsrc-2020Q1-base,
pkgsrc-2020Q1
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +2 -1
lines
Fix portability
Revision 1.2: download - view: text, markup, annotated - select for diffs
Sat May 11 14:27:18 2019 UTC (5 years, 7 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2019Q4-base,
pkgsrc-2019Q4,
pkgsrc-2019Q3-base,
pkgsrc-2019Q3,
pkgsrc-2019Q2-base,
pkgsrc-2019Q2
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +4 -6
lines
biology/vsearch: Upgrade to 2.13.4
pkgsrc patches incorporated into upstream release
Revision 1.1: download - view: text, markup, annotated - select for diffs
Fri May 10 16:19:22 2019 UTC (5 years, 7 months ago) by bacon
Branches: MAIN
biology/vsearch: import vsearch-2.13.3
VSEARCH supports de novo and reference based chimera detection,
clustering, full-length and prefix dereplication, rereplication,
reverse complementation, masking, all-vs-all pairwise global
alignment, exact and global alignment searching, shuffling,
subsampling and sorting. It also supports FASTQ file analysis,
filtering, conversion and merging of paired-end reads.
The aim of this project is to create an alternative to the USEARCH
tool developed by Robert C. Edgar (2010).
CVSweb <webmaster@jp.NetBSD.org>