CVS log for pkgsrc/biology/stacks/Makefile

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Default branch: MAIN

Revision 1.11 / (download) - annotate - [select for diffs], Mon Aug 14 05:23:52 2023 UTC (7 weeks, 2 days ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2023Q3-base, pkgsrc-2023Q3, HEAD
Changes since 1.10: +2 -2 lines
Diff to previous 1.10 (colored)

*: recursive bump for Python 3.11 as new default

Revision 1.10 / (download) - annotate - [select for diffs], Thu Jun 30 11:18:05 2022 UTC (15 months ago) by nia
Branch: MAIN
CVS Tags: pkgsrc-2023Q2-base, pkgsrc-2023Q2, pkgsrc-2023Q1-base, pkgsrc-2023Q1, pkgsrc-2022Q4-base, pkgsrc-2022Q4, pkgsrc-2022Q3-base, pkgsrc-2022Q3
Changes since 1.9: +2 -2 lines
Diff to previous 1.9 (colored)

*: Revbump packages that use Python at runtime without a PKGNAME prefix

Revision 1.9 / (download) - annotate - [select for diffs], Tue Jun 28 11:31:01 2022 UTC (15 months ago) by wiz
Branch: MAIN
Changes since 1.8: +2 -1 lines
Diff to previous 1.8 (colored)

*: recursive bump for perl 5.36

Revision 1.8 / (download) - annotate - [select for diffs], Mon Apr 25 14:36:19 2022 UTC (17 months, 1 week ago) by tnn
Branch: MAIN
CVS Tags: pkgsrc-2022Q2-base, pkgsrc-2022Q2
Changes since 1.7: +3 -1 lines
Diff to previous 1.7 (colored)

stacks: needs -lsocket on SunOS

Revision 1.7 / (download) - annotate - [select for diffs], Thu Mar 17 23:49:08 2022 UTC (18 months, 2 weeks ago) by bacon
Branch: MAIN
CVS Tags: pkgsrc-2022Q1-base, pkgsrc-2022Q1
Changes since 1.6: +28 -10 lines
Diff to previous 1.6 (colored)

biology/stacks: Update to 2.60

Numerous bug fixes and enhancements since 2.2
Unbreak build on Darwin

Revision 1.6 / (download) - annotate - [select for diffs], Mon May 24 19:49:12 2021 UTC (2 years, 4 months ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2021Q4-base, pkgsrc-2021Q4, pkgsrc-2021Q3-base, pkgsrc-2021Q3, pkgsrc-2021Q2-base, pkgsrc-2021Q2
Changes since 1.5: +2 -2 lines
Diff to previous 1.5 (colored)

*: recursive bump for perl 5.34

Revision 1.5 / (download) - annotate - [select for diffs], Fri Dec 4 20:45:00 2020 UTC (2 years, 9 months ago) by nia
Branch: MAIN
CVS Tags: pkgsrc-2021Q1-base, pkgsrc-2021Q1, pkgsrc-2020Q4-base, pkgsrc-2020Q4
Changes since 1.4: +2 -2 lines
Diff to previous 1.4 (colored)

Revbump packages with a runtime Python dep but no version prefix.

For the Python 3.8 default switch.

Revision 1.4 / (download) - annotate - [select for diffs], Mon Aug 31 18:06:40 2020 UTC (3 years, 1 month ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2020Q3-base, pkgsrc-2020Q3
Changes since 1.3: +2 -2 lines
Diff to previous 1.3 (colored)

*: bump PKGREVISION for perl-5.32.

Revision 1.3 / (download) - annotate - [select for diffs], Sun Aug 11 13:18:01 2019 UTC (4 years, 1 month ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2020Q2-base, pkgsrc-2020Q2, pkgsrc-2020Q1-base, pkgsrc-2020Q1, pkgsrc-2019Q4-base, pkgsrc-2019Q4, pkgsrc-2019Q3-base, pkgsrc-2019Q3
Changes since 1.2: +2 -2 lines
Diff to previous 1.2 (colored)

Bump PKGREVISIONs for perl 5.30.0

Revision 1.2 / (download) - annotate - [select for diffs], Thu Apr 25 07:32:37 2019 UTC (4 years, 5 months ago) by maya
Branch: MAIN
CVS Tags: pkgsrc-2019Q2-base, pkgsrc-2019Q2
Changes since 1.1: +2 -1 lines
Diff to previous 1.1 (colored)

PKGREVISION bump for anything using python without a PYPKGPREFIX.

This is a semi-manual PKGREVISION bump.

Revision 1.1 / (download) - annotate - [select for diffs], Sat Dec 22 21:52:06 2018 UTC (4 years, 9 months ago) by bacon
Branch: MAIN
CVS Tags: pkgsrc-2019Q1-base, pkgsrc-2019Q1, pkgsrc-2018Q4-base, pkgsrc-2018Q4

biology/stacks: import stacks-2.2

Stacks is a software pipeline for building loci from short-read sequences, such
as those generated on the Illumina platform. Stacks was developed to work with
restriction enzyme-based data, such as RAD-seq, for the purpose of building
genetic maps and conducting population genomics and phylogeography.

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