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biology/py-dnaio: Update to 1.2.0 Numerous bug fixes and enhancements since 0.9.1 Changes: https://github.com/marcelm/dnaio/tags
py-dnaio: update to 0.9.1. v0.9.1 (2022-08-01) ------------------- * :pr:`85`: macOS wheels are now also built as part of the release procedure. * :pr:`81`: API documentation improvements and minor code refactors for readability. v0.9.0 (2022-05-17) ------------------- * :pr:`79`: Added a `records_are_mates` function to be used for checking whether three or more records are mates of each other (by checking the ID). * :pr:`74`, :pr:`68`: Made FASTQ parsing faster by implementing the check for ASCII using SSE vector instructions. * :pr:`72`: Added a `tutorial <https://dnaio.readthedocs.io/en/latest/tutorial.html>`_. v0.8.0 (2022-03-26) ------------------- * Preliminary documentation is available at <https://dnaio.readthedocs.io/>. * :pr:`53`: Renamed ``Sequence`` to `SequenceRecord`. The previous name is still available as an alias so that existing code will continue to work. * When reading a FASTQ file, there is now a check that ensures that all characters are ASCII. * Function ``record_names_match`` is deprecated, use `SequenceRecord.is_mate` instead. * Dropped Python 3.6 support as it is end-of-life. v0.7.1 (2022-01-26) ------------------- * :pr:`34`: Fix parsing of FASTA files that just contain a comment and no reads v0.7.0 (2022-01-17) ------------------- * @rhpvorderman contributed many performance improvements in :pr:`15`, :pr:`17`, :pr:`18`, :pr:`20`, :pr:`21`, :pr:`22`, :pr:`23`. Reading and writing FASTQ files and reading of paired-end FASTQ files was sped up significantly. For example, reading uncompressed FASTQ is 50% faster (!) than before. * :pr:`28`: Windows support added v0.6.0 (2021-09-28) ------------------- * :pr:`12`: Improve FASTQ writing speed twofold (thanks to @rhpvorderman) v0.5.2 (2021-09-07) ------------------- * :issue:`7`: Ignore a trailing "3" in the read id
biology: Replace RMD160 checksums with BLAKE2s checksums All checksums have been double-checked against existing RMD160 and SHA512 hashes
biology: Remove SHA1 hashes for distfiles
py-dnaio: updated to 0.5.1 v0.5.1 Add py.typed and distribute .pyi files
biology/py-dnaio: import py38-dnaio-0.5.0 dnaio is a Python 3 library for fast input and output of FASTQ and FASTA files. It supports paired-end data in separate files, interleaved paired-end in a single file and compression using gzip, bzip, and xz.