File:  [cvs.NetBSD.org] / pkgsrc / biology / plink / Makefile
Revision 1.9: download - view: text, annotated - select for diffs
Mon Oct 12 21:51:58 2020 UTC (4 years, 6 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q3-base, pkgsrc-2023Q3, pkgsrc-2023Q2-base, pkgsrc-2023Q2, pkgsrc-2023Q1-base, pkgsrc-2023Q1, pkgsrc-2022Q4-base, pkgsrc-2022Q4, pkgsrc-2022Q3-base, pkgsrc-2022Q3, pkgsrc-2022Q2-base, pkgsrc-2022Q2, pkgsrc-2022Q1-base, pkgsrc-2022Q1, pkgsrc-2021Q4-base, pkgsrc-2021Q4, pkgsrc-2021Q3-base, pkgsrc-2021Q3, pkgsrc-2021Q2-base, pkgsrc-2021Q2, pkgsrc-2021Q1-base, pkgsrc-2021Q1, pkgsrc-2020Q4-base, pkgsrc-2020Q4, HEAD
math/blas, math/lapack: Install interchangeable BLAS system

Install the new interchangeable BLAS system created by Thomas Orgis,
currently supporting Netlib BLAS/LAPACK, OpenBLAS, cblas, lapacke, and
Apple's Accelerate.framework.  This system allows the user to select any
BLAS implementation without modifying packages or using package options, by
setting PKGSRC_BLAS_TYPES in mk.conf. See mk/blas.buildlink3.mk for details.

This commit should not alter behavior of existing packages as the system
defaults to Netlib BLAS/LAPACK, which until now has been the only supported
implementation.

Details:

Add new mk/blas.buildlink3.mk for inclusion in dependent packages
Install compatible Netlib math/blas and math/lapack packages
Update math/blas and math/lapack MAINTAINER approved by adam@
OpenBLAS, cblas, and lapacke will follow in separate commits
Update direct dependents to use mk/blas.buildlink3.mk
Perform recursive revbump

# $NetBSD: Makefile,v 1.9 2020/10/12 21:51:58 bacon Exp $

DISTNAME=	plink-1.07-src
PKGNAME=	${DISTNAME:-src=}
PKGREVISION=	1
CATEGORIES=	biology
#MASTER_SITES=	http://pngu.mgh.harvard.edu/~purcell/plink/dist/
EXTRACT_SUFX=	.zip

MAINTAINER=	bacon@NetBSD.org
#HOMEPAGE=	http://pngu.mgh.harvard.edu/~purcell/plink/
COMMENT=	Whole-genome association analysis toolset
LICENSE=	gnu-gpl-v2

USE_LANGUAGES=	c c++ fortran77
USE_TOOLS+=	gmake

CXXFLAGS+=	-Dfopen64=fopen

MAKE_FLAGS+=	LIBDL=${DL_LIBS:Q}

LIB_LAPACK=	-L${LOCALBASE}/lib ${COMPILER_RPATH_FLAG}${LOCALBASE}/lib -llapack -lblas -lf2c
MAKE_FLAGS+=	WITH_LAPACK=1 LIB_LAPACK=${LIB_LAPACK:Q}

MAKE_ENV.SunOS+=	LIB="-lsocket -lnsl"

INSTALLATION_DIRS=	bin

do-install:
	${INSTALL_PROGRAM} ${WRKSRC}/plink ${DESTDIR}${PREFIX}/bin

do-test:
	cd ${WRKSRC} && ./plink --file test
	cd ${WRKSRC} && ./plink --file test --freq
	cd ${WRKSRC} && ./plink --file test --assoc
	cd ${WRKSRC} && ./plink --file test --make-bed

.include "../../devel/libf2c/buildlink3.mk"
.include "../../devel/zlib/buildlink3.mk"
.include "../../mk/blas.buildlink3.mk"
.include "../../mk/dlopen.buildlink3.mk"
.include "../../mk/bsd.pkg.mk"

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