CVS log for pkgsrc/biology/plink/Makefile
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Request diff between arbitrary revisions
Keyword substitution: kv
Default branch: MAIN
Revision 1.10: download - view: text, markup, annotated - select for diffs
Sun Dec 24 16:26:42 2023 UTC (15 months, 3 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2025Q1-base,
pkgsrc-2025Q1,
pkgsrc-2024Q4-base,
pkgsrc-2024Q4,
pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
pkgsrc-2024Q2-base,
pkgsrc-2024Q2,
pkgsrc-2024Q1-base,
pkgsrc-2024Q1,
pkgsrc-2023Q4-base,
pkgsrc-2023Q4,
HEAD
Diff to: previous 1.9: preferred, colored
Changes since revision 1.9: +6 -1
lines
biology/plink: Unbreak build on Darwin
Remove -lcrypt from link:
macOS does not have libcrypt, but has crypt() in libc
Revision 1.9: download - view: text, markup, annotated - select for diffs
Mon Oct 12 21:51:58 2020 UTC (4 years, 6 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q3-base,
pkgsrc-2023Q3,
pkgsrc-2023Q2-base,
pkgsrc-2023Q2,
pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2,
pkgsrc-2022Q1-base,
pkgsrc-2022Q1,
pkgsrc-2021Q4-base,
pkgsrc-2021Q4,
pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2,
pkgsrc-2021Q1-base,
pkgsrc-2021Q1,
pkgsrc-2020Q4-base,
pkgsrc-2020Q4
Diff to: previous 1.8: preferred, colored
Changes since revision 1.8: +3 -3
lines
math/blas, math/lapack: Install interchangeable BLAS system
Install the new interchangeable BLAS system created by Thomas Orgis,
currently supporting Netlib BLAS/LAPACK, OpenBLAS, cblas, lapacke, and
Apple's Accelerate.framework. This system allows the user to select any
BLAS implementation without modifying packages or using package options, by
setting PKGSRC_BLAS_TYPES in mk.conf. See mk/blas.buildlink3.mk for details.
This commit should not alter behavior of existing packages as the system
defaults to Netlib BLAS/LAPACK, which until now has been the only supported
implementation.
Details:
Add new mk/blas.buildlink3.mk for inclusion in dependent packages
Install compatible Netlib math/blas and math/lapack packages
Update math/blas and math/lapack MAINTAINER approved by adam@
OpenBLAS, cblas, and lapacke will follow in separate commits
Update direct dependents to use mk/blas.buildlink3.mk
Perform recursive revbump
Revision 1.8: download - view: text, markup, annotated - select for diffs
Sun Jan 13 22:06:42 2019 UTC (6 years, 3 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2020Q3-base,
pkgsrc-2020Q3,
pkgsrc-2020Q2-base,
pkgsrc-2020Q2,
pkgsrc-2020Q1-base,
pkgsrc-2020Q1,
pkgsrc-2019Q4-base,
pkgsrc-2019Q4,
pkgsrc-2019Q3-base,
pkgsrc-2019Q3,
pkgsrc-2019Q2-base,
pkgsrc-2019Q2,
pkgsrc-2019Q1-base,
pkgsrc-2019Q1
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +2 -2
lines
Multiple packages: Replace obsolete maintainer email
jwbacon@tds.net ==> bacon@NetBSD.org
Revision 1.7: download - view: text, markup, annotated - select for diffs
Mon Jan 1 01:18:03 2018 UTC (7 years, 3 months ago) by rillig
Branches: MAIN
CVS tags: pkgsrc-2018Q4-base,
pkgsrc-2018Q4,
pkgsrc-2018Q3-base,
pkgsrc-2018Q3,
pkgsrc-2018Q2-base,
pkgsrc-2018Q2,
pkgsrc-2018Q1-base,
pkgsrc-2018Q1
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +6 -6
lines
Cleanup: replace curly braces with parentheses.
Revision 1.6: download - view: text, markup, annotated - select for diffs
Sun Sep 3 08:36:50 2017 UTC (7 years, 7 months ago) by wiz
Branches: MAIN
CVS tags: pkgsrc-2017Q4-base,
pkgsrc-2017Q4,
pkgsrc-2017Q3-base,
pkgsrc-2017Q3
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +3 -3
lines
Comment out dead MASTER_SITES/HOMEPAGEs.
Revision 1.5: download - view: text, markup, annotated - select for diffs
Thu Feb 25 11:21:11 2016 UTC (9 years, 1 month ago) by jperkin
Branches: MAIN
CVS tags: pkgsrc-2017Q2-base,
pkgsrc-2017Q2,
pkgsrc-2017Q1-base,
pkgsrc-2017Q1,
pkgsrc-2016Q4-base,
pkgsrc-2016Q4,
pkgsrc-2016Q3-base,
pkgsrc-2016Q3,
pkgsrc-2016Q2-base,
pkgsrc-2016Q2,
pkgsrc-2016Q1-base,
pkgsrc-2016Q1
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +2 -5
lines
Use OPSYSVARS.
Revision 1.4: download - view: text, markup, annotated - select for diffs
Tue Dec 29 04:54:37 2015 UTC (9 years, 3 months ago) by dholland
Branches: MAIN
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +2 -2
lines
Whitespace.
Revision 1.3: download - view: text, markup, annotated - select for diffs
Tue Dec 10 14:20:49 2013 UTC (11 years, 4 months ago) by jperkin
Branches: MAIN
CVS tags: pkgsrc-2015Q4-base,
pkgsrc-2015Q4,
pkgsrc-2015Q3-base,
pkgsrc-2015Q3,
pkgsrc-2015Q2-base,
pkgsrc-2015Q2,
pkgsrc-2015Q1-base,
pkgsrc-2015Q1,
pkgsrc-2014Q4-base,
pkgsrc-2014Q4,
pkgsrc-2014Q3-base,
pkgsrc-2014Q3,
pkgsrc-2014Q2-base,
pkgsrc-2014Q2,
pkgsrc-2014Q1-base,
pkgsrc-2014Q1,
pkgsrc-2013Q4-base,
pkgsrc-2013Q4
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +6 -1
lines
Add socket libraries on SunOS. Patch from Sebastian Wiedenroth.
Revision 1.2: download - view: text, markup, annotated - select for diffs
Fri Sep 14 17:56:15 2012 UTC (12 years, 7 months ago) by asau
Branches: MAIN
CVS tags: pkgsrc-2013Q3-base,
pkgsrc-2013Q3,
pkgsrc-2013Q2-base,
pkgsrc-2013Q2,
pkgsrc-2013Q1-base,
pkgsrc-2013Q1,
pkgsrc-2012Q4-base,
pkgsrc-2012Q4,
pkgsrc-2012Q3-base,
pkgsrc-2012Q3
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +2 -1
lines
Fix PKGNAME.
Revision 1.1.1.1 (vendor branch): download - view: text, markup, annotated - select for diffs
Fri Sep 14 17:46:23 2012 UTC (12 years, 7 months ago) by asau
Branches: TNF
CVS tags: pkgsrc-base
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +0 -0
lines
Import PLINK 1.07 as biology/plink
From Jason Bacon via pkgsrc-wip.
PLINK is a free, open-source whole genome association analysis
toolset, designed to perform a range of basic, large-scale
analyses in a computationally efficient manner.
The focus of PLINK is purely on analysis of genotype/phenotype
data, so there is no support for steps prior to this (e.g. study
design and planning, generating genotype or CNV calls from raw
data). Through integration with gPLINK and Haploview, there is
some support for the subsequent visualization, annotation and
storage of results.
Revision 1.1: download - view: text, markup, annotated - select for diffs
Fri Sep 14 17:46:23 2012 UTC (12 years, 7 months ago) by asau
Branches: MAIN
Initial revision
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