CVS log for pkgsrc/biology/peak-classifier/distinfo
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Revision 1.13: download - view: text, markup, annotated - select for diffs
Fri Nov 29 15:17:46 2024 UTC (10 days, 21 hours ago) by bacon
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CVS tags: HEAD
Diff to: previous 1.12: preferred, colored
Changes since revision 1.12: +3 -3
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biology/peak-classifier: Update to 0.1.4.21
Fix build for non-default PKGMANDIR
Add --version flag
Revision 1.12: download - view: text, markup, annotated - select for diffs
Sat Oct 28 20:37:17 2023 UTC (13 months, 1 week ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
pkgsrc-2024Q2-base,
pkgsrc-2024Q2,
pkgsrc-2024Q1-base,
pkgsrc-2024Q1,
pkgsrc-2023Q4-base,
pkgsrc-2023Q4
Diff to: previous 1.11: preferred, colored
Changes since revision 1.11: +3 -3
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biology/peak-classifier: Update to 0.1.4.13
Updates for new libxtend API
Revision 1.11: download - view: text, markup, annotated - select for diffs
Sat Aug 12 14:52:46 2023 UTC (15 months, 4 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q3-base,
pkgsrc-2023Q3
Diff to: previous 1.10: preferred, colored
Changes since revision 1.10: +3 -3
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biology/peak-classifier: Update to 0.1.4.11
Updates for biolibc GFF3 API changes
Revision 1.10: download - view: text, markup, annotated - select for diffs
Wed Jun 14 18:48:54 2023 UTC (17 months, 3 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q2-base,
pkgsrc-2023Q2
Diff to: previous 1.9: preferred, colored
Changes since revision 1.9: +3 -3
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biology/peak-classifier: Update to 0.1.4.8
Updates for libxtend API
Minor fixes
Revision 1.9: download - view: text, markup, annotated - select for diffs
Sun Dec 11 21:16:46 2022 UTC (23 months, 4 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4
Diff to: previous 1.8: preferred, colored
Changes since revision 1.8: +3 -3
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biology/peak-classifier: Update to 0.1.4-5
Update for biolibc API changes
Revision 1.8: download - view: text, markup, annotated - select for diffs
Sat Jun 11 19:52:58 2022 UTC (2 years, 6 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +3 -3
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biology/peak-classifier: Update to 0.1.4
Update for bl_gff_t API streamlining
https://github.com/auerlab/peak-classifier/releases
Revision 1.7: download - view: text, markup, annotated - select for diffs
Tue Mar 15 21:11:58 2022 UTC (2 years, 8 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2022Q1-base,
pkgsrc-2022Q1
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +3 -3
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biology/peak-classifier: Update to 0.1.3
Minor update for biolibc 0.2.2 API changes
Revision 1.6: download - view: text, markup, annotated - select for diffs
Tue Dec 14 19:08:11 2021 UTC (2 years, 11 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q4-base,
pkgsrc-2021Q4
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +4 -4
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biology/peak-classifier: Update to 0.1.2
Mainly updates for evolving libxtend and biolibc APIs
A few minor fixes and enhancements
Revision 1.5: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:03:42 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +2 -2
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biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
Revision 1.4: download - view: text, markup, annotated - select for diffs
Thu Oct 7 13:19:44 2021 UTC (3 years, 2 months ago) by nia
Branches: MAIN
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +1 -2
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biology: Remove SHA1 hashes for distfiles
Revision 1.3: download - view: text, markup, annotated - select for diffs
Fri Sep 3 01:57:56 2021 UTC (3 years, 3 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base,
pkgsrc-2021Q3
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +4 -4
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biology/peak-classifier: Update to 0.1.1.21
Fix regression: Replace BL_BED_SET_STRAND() macro with
bl_bed_set_strand(), which performs sanity checks
Revision 1.2: download - view: text, markup, annotated - select for diffs
Sat Aug 28 18:40:29 2021 UTC (3 years, 3 months ago) by bacon
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Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +4 -4
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biology/peak-classifier: Update to 0.1.1.20
Updates for libxtend and biolibc API changes
Revision 1.1: download - view: text, markup, annotated - select for diffs
Tue Jun 15 13:54:14 2021 UTC (3 years, 5 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q2-base,
pkgsrc-2021Q2
biology/peak-classifier: import peak-classifier-0.1.1
Classify ChIP/ATAC-Seq peaks based on features provided in a GFF
Peaks are provided in a BED file sorted by chromosome and position. The GFF
must be sorted by chromosome and position, with gene-level features separated
by ### tags and each gene organized into subfeatures such as transcripts and
exons. This is the default for common data sources.
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