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CVS log for pkgsrc/biology/ncbi-blast+/Makefile

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Default branch: MAIN


Revision 1.33 / (download) - annotate - [select for diffs], Wed Nov 23 16:19:25 2022 UTC (2 months, 1 week ago) by adam
Branch: MAIN
CVS Tags: pkgsrc-2022Q4-base, pkgsrc-2022Q4, HEAD
Changes since 1.32: +2 -2 lines
Diff to previous 1.32 (colored)

massive revision bump after textproc/icu update

Revision 1.32 / (download) - annotate - [select for diffs], Wed Oct 26 10:31:14 2022 UTC (3 months, 1 week ago) by wiz
Branch: MAIN
Changes since 1.31: +2 -2 lines
Diff to previous 1.31 (colored)

*: bump PKGREVISION for libunistring shlib major bump

Revision 1.31 / (download) - annotate - [select for diffs], Thu Jun 30 11:18:04 2022 UTC (7 months ago) by nia
Branch: MAIN
CVS Tags: pkgsrc-2022Q3-base, pkgsrc-2022Q3
Changes since 1.30: +2 -2 lines
Diff to previous 1.30 (colored)

*: Revbump packages that use Python at runtime without a PKGNAME prefix

Revision 1.30 / (download) - annotate - [select for diffs], Tue Jun 28 11:31:01 2022 UTC (7 months ago) by wiz
Branch: MAIN
Changes since 1.29: +2 -2 lines
Diff to previous 1.29 (colored)

*: recursive bump for perl 5.36

Revision 1.29 / (download) - annotate - [select for diffs], Mon Apr 18 19:10:27 2022 UTC (9 months, 2 weeks ago) by adam
Branch: MAIN
CVS Tags: pkgsrc-2022Q2-base, pkgsrc-2022Q2
Changes since 1.28: +2 -1 lines
Diff to previous 1.28 (colored)

revbump for textproc/icu update

Revision 1.28 / (download) - annotate - [select for diffs], Sun Apr 10 20:54:51 2022 UTC (9 months, 3 weeks ago) by bacon
Branch: MAIN
Changes since 1.27: +6 -3 lines
Diff to previous 1.27 (colored)

biology/ncbi-blast+: Update to 2.13.0

Several minor bug fixes and improvements since 2.11.0

Changes: https://www.ncbi.nlm.nih.gov/books/NBK131777/?report=reader

Revision 1.27 / (download) - annotate - [select for diffs], Wed Mar 16 00:32:01 2022 UTC (10 months, 2 weeks ago) by bacon
Branch: MAIN
CVS Tags: pkgsrc-2022Q1-base, pkgsrc-2022Q1
Changes since 1.26: +2 -1 lines
Diff to previous 1.26 (colored)

biology/ncbi-blast+: Disable MKPIE

Temporary fix to unbreak build on NetBSD with freeze approaching

Revision 1.26 / (download) - annotate - [select for diffs], Wed Dec 8 16:03:24 2021 UTC (13 months, 3 weeks ago) by adam
Branch: MAIN
CVS Tags: pkgsrc-2021Q4-base, pkgsrc-2021Q4
Changes since 1.25: +2 -2 lines
Diff to previous 1.25 (colored)

revbump for icu and libffi

Revision 1.25 / (download) - annotate - [select for diffs], Wed Sep 29 19:00:20 2021 UTC (16 months ago) by adam
Branch: MAIN
Changes since 1.24: +2 -1 lines
Diff to previous 1.24 (colored)

revbump for boost-libs

Revision 1.24 / (download) - annotate - [select for diffs], Fri Jun 11 13:47:39 2021 UTC (19 months, 3 weeks ago) by bacon
Branch: MAIN
CVS Tags: pkgsrc-2021Q3-base, pkgsrc-2021Q3, pkgsrc-2021Q2-base, pkgsrc-2021Q2
Changes since 1.23: +6 -4 lines
Diff to previous 1.23 (colored)

biology/ncbi-blast+: Update to 2.11.0

Release notes: https://www.ncbi.nlm.nih.gov/books/NBK131777/

Revision 1.23 / (download) - annotate - [select for diffs], Mon May 24 19:49:11 2021 UTC (20 months, 1 week ago) by wiz
Branch: MAIN
Changes since 1.22: +2 -2 lines
Diff to previous 1.22 (colored)

*: recursive bump for perl 5.34

Revision 1.22 / (download) - annotate - [select for diffs], Wed Apr 21 13:24:24 2021 UTC (21 months, 1 week ago) by adam
Branch: MAIN
Changes since 1.21: +2 -2 lines
Diff to previous 1.21 (colored)

revbump for boost-libs

Revision 1.21 / (download) - annotate - [select for diffs], Wed Apr 21 11:41:03 2021 UTC (21 months, 1 week ago) by adam
Branch: MAIN
Changes since 1.20: +2 -2 lines
Diff to previous 1.20 (colored)

revbump for textproc/icu

Revision 1.20 / (download) - annotate - [select for diffs], Fri Dec 4 20:45:00 2020 UTC (2 years, 1 month ago) by nia
Branch: MAIN
CVS Tags: pkgsrc-2021Q1-base, pkgsrc-2021Q1, pkgsrc-2020Q4-base, pkgsrc-2020Q4
Changes since 1.19: +2 -2 lines
Diff to previous 1.19 (colored)

Revbump packages with a runtime Python dep but no version prefix.

For the Python 3.8 default switch.

Revision 1.19 / (download) - annotate - [select for diffs], Thu Nov 5 09:07:32 2020 UTC (2 years, 2 months ago) by ryoon
Branch: MAIN
Changes since 1.18: +2 -2 lines
Diff to previous 1.18 (colored)

*: Recursive revbump from textproc/icu-68.1

Revision 1.18 / (download) - annotate - [select for diffs], Mon Aug 31 18:06:39 2020 UTC (2 years, 5 months ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2020Q3-base, pkgsrc-2020Q3
Changes since 1.17: +2 -2 lines
Diff to previous 1.17 (colored)

*: bump PKGREVISION for perl-5.32.

Revision 1.17 / (download) - annotate - [select for diffs], Tue Jun 2 08:23:16 2020 UTC (2 years, 8 months ago) by adam
Branch: MAIN
CVS Tags: pkgsrc-2020Q2-base, pkgsrc-2020Q2
Changes since 1.16: +2 -2 lines
Diff to previous 1.16 (colored)

Revbump for icu

Revision 1.16 / (download) - annotate - [select for diffs], Mon May 25 05:19:06 2020 UTC (2 years, 8 months ago) by rillig
Branch: MAIN
Changes since 1.15: +7 -1 lines
Diff to previous 1.15 (colored)

biology/ncbi-blast+: document possible array[char] bug

Revision 1.15 / (download) - annotate - [select for diffs], Fri May 22 10:55:57 2020 UTC (2 years, 8 months ago) by adam
Branch: MAIN
Changes since 1.14: +2 -2 lines
Diff to previous 1.14 (colored)

revbump after updating security/nettle

Revision 1.14 / (download) - annotate - [select for diffs], Sun Apr 12 08:28:20 2020 UTC (2 years, 9 months ago) by adam
Branch: MAIN
Changes since 1.13: +2 -2 lines
Diff to previous 1.13 (colored)

Recursive revision bump after textproc/icu update

Revision 1.13 / (download) - annotate - [select for diffs], Sun Mar 8 16:48:52 2020 UTC (2 years, 10 months ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2020Q1-base, pkgsrc-2020Q1
Changes since 1.12: +2 -2 lines
Diff to previous 1.12 (colored)

*: recursive bump for libffi

Revision 1.12 / (download) - annotate - [select for diffs], Sat Nov 2 22:09:00 2019 UTC (3 years, 3 months ago) by rillig
Branch: MAIN
CVS Tags: pkgsrc-2019Q4-base, pkgsrc-2019Q4
Changes since 1.11: +8 -8 lines
Diff to previous 1.11 (colored)

biology: align variable assignments

pkglint -Wall -F --only aligned --only indent -r

Revision 1.11 / (download) - annotate - [select for diffs], Sun Aug 11 13:18:00 2019 UTC (3 years, 5 months ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2019Q3-base, pkgsrc-2019Q3
Changes since 1.10: +2 -2 lines
Diff to previous 1.10 (colored)

Bump PKGREVISIONs for perl 5.30.0

Revision 1.10 / (download) - annotate - [select for diffs], Sat Jul 20 22:46:10 2019 UTC (3 years, 6 months ago) by wiz
Branch: MAIN
Changes since 1.9: +2 -2 lines
Diff to previous 1.9 (colored)

*: recursive bump for nettle 3.5.1

Revision 1.9 / (download) - annotate - [select for diffs], Fri Jun 28 20:17:35 2019 UTC (3 years, 7 months ago) by bacon
Branch: MAIN
CVS Tags: pkgsrc-2019Q2-base, pkgsrc-2019Q2
Changes since 1.8: +4 -3 lines
Diff to previous 1.8 (colored)

biology/ncbi-blast+: Unbreak configure

Configure script does not support --enable-option-checking
Also add perl to USE_TOOLS

Revision 1.8 / (download) - annotate - [select for diffs], Thu Apr 25 07:32:37 2019 UTC (3 years, 9 months ago) by maya
Branch: MAIN
Changes since 1.7: +2 -2 lines
Diff to previous 1.7 (colored)

PKGREVISION bump for anything using python without a PYPKGPREFIX.

This is a semi-manual PKGREVISION bump.

Revision 1.7 / (download) - annotate - [select for diffs], Wed Apr 3 00:32:26 2019 UTC (3 years, 10 months ago) by ryoon
Branch: MAIN
Changes since 1.6: +2 -1 lines
Diff to previous 1.6 (colored)

Recursive revbump from textproc/icu

Revision 1.6 / (download) - annotate - [select for diffs], Mon Jan 7 15:00:10 2019 UTC (4 years ago) by bacon
Branch: MAIN
CVS Tags: pkgsrc-2019Q1-base, pkgsrc-2019Q1
Changes since 1.5: +6 -9 lines
Diff to previous 1.5 (colored)

ncbi-blast+: Upgrade to 2.8.1

Support for new BLAST database format
Increased makeblastdb output file size limit to 4GB
Other minor bug fixes and enhancements

OK wiz@

Revision 1.5 / (download) - annotate - [select for diffs], Sun Dec 9 18:52:17 2018 UTC (4 years, 1 month ago) by adam
Branch: MAIN
CVS Tags: pkgsrc-2018Q4-base, pkgsrc-2018Q4
Changes since 1.4: +2 -2 lines
Diff to previous 1.4 (colored)

revbump after updating textproc/icu

Revision 1.4 / (download) - annotate - [select for diffs], Fri Jul 20 03:34:03 2018 UTC (4 years, 6 months ago) by ryoon
Branch: MAIN
CVS Tags: pkgsrc-2018Q3-base, pkgsrc-2018Q3
Changes since 1.3: +2 -2 lines
Diff to previous 1.3 (colored)

Recursive revbump from textproc/icu-62.1

Revision 1.3 / (download) - annotate - [select for diffs], Wed Jul 4 13:40:10 2018 UTC (4 years, 7 months ago) by jperkin
Branch: MAIN
Changes since 1.2: +2 -2 lines
Diff to previous 1.2 (colored)

*: Move SUBST_STAGE from post-patch to pre-configure

Performing substitutions during post-patch breaks tools such as mkpatches,
making it very difficult to regenerate correct patches after making changes,
and often leading to substituted string replacements being committed.

Revision 1.2 / (download) - annotate - [select for diffs], Tue May 22 21:37:29 2018 UTC (4 years, 8 months ago) by bacon
Branch: MAIN
CVS Tags: pkgsrc-2018Q2-base, pkgsrc-2018Q2
Changes since 1.1: +2 -1 lines
Diff to previous 1.1 (colored)

biology/ncbi-blast+: Respect env to support PKGSRC_USE_RELRO

Fix a previous patch that hard-coded relro support by patching in pkgsrc
CFLAGS, CXXFLAGS, and LDFLAGS instead.

OK wiz@

Revision 1.1 / (download) - annotate - [select for diffs], Fri Apr 27 20:28:28 2018 UTC (4 years, 9 months ago) by bacon
Branch: MAIN

biology/ncbi-blast+: import ncbi-blast+-2.7.1

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity
between sequences. The program compares nucleotide or protein sequences to
sequence databases and calculates the statistical significance of matches.
BLAST can be used to infer functional and evolutionary relationships between
sequences as well as help identify members of gene families.

OK wiz@

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