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Default branch: MAIN
Revision 1.12 / (download) - annotate - [select for diffs], Wed May 20 06:09:06 2020 UTC (3 years ago) by rillig
Branch: MAIN
CVS Tags: pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2,
pkgsrc-2022Q1-base,
pkgsrc-2022Q1,
pkgsrc-2021Q4-base,
pkgsrc-2021Q4,
pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2,
pkgsrc-2021Q1-base,
pkgsrc-2021Q1,
pkgsrc-2020Q4-base,
pkgsrc-2020Q4,
pkgsrc-2020Q3-base,
pkgsrc-2020Q3,
pkgsrc-2020Q2-base,
pkgsrc-2020Q2,
HEAD
Changes since 1.11: +8 -1
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Diff to previous 1.11 (colored)
mark packages that fail with -Werror=char-subscripts These packages are susceptible to bugs when confronted with non-ASCII characters. See https://gcc.gnu.org/bugzilla/show_bug.cgi?id=94182. It takes some time to analyze and fix these individually, therefore they are only marked as "needs work".
Revision 1.11 / (download) - annotate - [select for diffs], Sun Jan 26 05:26:15 2020 UTC (3 years, 4 months ago) by rillig
Branch: MAIN
CVS Tags: pkgsrc-2020Q1-base,
pkgsrc-2020Q1
Changes since 1.10: +2 -2
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Diff to previous 1.10 (colored)
all: migrate some SourceForge homepage URLs back from https to http https://mail-index.netbsd.org/pkgsrc-changes/2020/01/18/msg205146.html In the above commit, the homepage URLs were migrated from http to https, assuming that SourceForge would use the same host names for both http and https connections. This assumption was wrong. Their documentation at https://sourceforge.net/p/forge/documentation/Custom%20VHOSTs/ states that the https URLs use the domain sourceforge.io instead. To make the homepages from the above commit reachable again, pkglint has been extended to check for reachable homepages. This check is only enabled when the --network command line option is given. Each of the homepages that referred to https://$project.sourceforge.net before was migrated to https://$project.sourceforge.io (27), and if that was not reachable, to the fallback URL http://$project.sourceforge.net (163).
Revision 1.10 / (download) - annotate - [select for diffs], Sat Jan 18 23:30:09 2020 UTC (3 years, 4 months ago) by rillig
Branch: MAIN
Changes since 1.9: +2 -2
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Diff to previous 1.9 (colored)
all: migrate several HOMEPAGEs to https pkglint --only "https instead of http" -r -F With manual adjustments afterwards since pkglint 19.4.4 fixed a few indentations in unrelated lines. This mainly affects projects hosted at SourceForce, as well as freedesktop.org, CTAN and GNU.
Revision 1.9 / (download) - annotate - [select for diffs], Thu Oct 9 14:06:01 2014 UTC (8 years, 7 months ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2019Q4-base,
pkgsrc-2019Q4,
pkgsrc-2019Q3-base,
pkgsrc-2019Q3,
pkgsrc-2019Q2-base,
pkgsrc-2019Q2,
pkgsrc-2019Q1-base,
pkgsrc-2019Q1,
pkgsrc-2018Q4-base,
pkgsrc-2018Q4,
pkgsrc-2018Q3-base,
pkgsrc-2018Q3,
pkgsrc-2018Q2-base,
pkgsrc-2018Q2,
pkgsrc-2018Q1-base,
pkgsrc-2018Q1,
pkgsrc-2017Q4-base,
pkgsrc-2017Q4,
pkgsrc-2017Q3-base,
pkgsrc-2017Q3,
pkgsrc-2017Q2-base,
pkgsrc-2017Q2,
pkgsrc-2017Q1-base,
pkgsrc-2017Q1,
pkgsrc-2016Q4-base,
pkgsrc-2016Q4,
pkgsrc-2016Q3-base,
pkgsrc-2016Q3,
pkgsrc-2016Q2-base,
pkgsrc-2016Q2,
pkgsrc-2016Q1-base,
pkgsrc-2016Q1,
pkgsrc-2015Q4-base,
pkgsrc-2015Q4,
pkgsrc-2015Q3-base,
pkgsrc-2015Q3,
pkgsrc-2015Q2-base,
pkgsrc-2015Q2,
pkgsrc-2015Q1-base,
pkgsrc-2015Q1,
pkgsrc-2014Q4-base,
pkgsrc-2014Q4
Changes since 1.8: +1 -3
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Diff to previous 1.8 (colored)
Remove pkgviews: don't set PKG_INSTALLATION_TYPES in Makefiles.
Revision 1.8 / (download) - annotate - [select for diffs], Tue Sep 11 20:32:13 2012 UTC (10 years, 8 months ago) by asau
Branch: MAIN
CVS Tags: pkgsrc-2014Q3-base,
pkgsrc-2014Q3,
pkgsrc-2014Q2-base,
pkgsrc-2014Q2,
pkgsrc-2014Q1-base,
pkgsrc-2014Q1,
pkgsrc-2013Q4-base,
pkgsrc-2013Q4,
pkgsrc-2013Q3-base,
pkgsrc-2013Q3,
pkgsrc-2013Q2-base,
pkgsrc-2013Q2,
pkgsrc-2013Q1-base,
pkgsrc-2013Q1,
pkgsrc-2012Q4-base,
pkgsrc-2012Q4,
pkgsrc-2012Q3-base,
pkgsrc-2012Q3
Changes since 1.7: +1 -2
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Diff to previous 1.7 (colored)
"user-destdir" is default these days
Revision 1.7 / (download) - annotate - [select for diffs], Sun Sep 19 07:13:37 2010 UTC (12 years, 8 months ago) by obache
Branch: MAIN
CVS Tags: pkgsrc-2012Q2-base,
pkgsrc-2012Q2,
pkgsrc-2012Q1-base,
pkgsrc-2012Q1,
pkgsrc-2011Q4-base,
pkgsrc-2011Q4,
pkgsrc-2011Q3-base,
pkgsrc-2011Q3,
pkgsrc-2011Q2-base,
pkgsrc-2011Q2,
pkgsrc-2011Q1-base,
pkgsrc-2011Q1,
pkgsrc-2010Q4-base,
pkgsrc-2010Q4,
pkgsrc-2010Q3-base,
pkgsrc-2010Q3
Changes since 1.6: +9 -4
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Diff to previous 1.6 (colored)
Update lucy to 1.20. Based on PR#43777 by Kamel Derouiche, with some clean up by me. Version 1.20, 9/3/2008. This version fixes a bug that caused lucy to fail when there was too much information on the FASTA header lines in the input files. Lucy had a 256 character buffer for reading lines from the input files. If any FASTA header lines were longer than 256 characters, the remaining characters would get read as part of the FASTA sequence. The solution implemented in this version is simply to increase the buffer size to 4096 characters. While that still leaves the potential for the same error to occur with extremely long header lines, the limitation that this entails seems reasonable, and this should fix the problem for all pratical purposes. --------------------------------------------------------------------- Version 1.19, 12/30/2003. This version fixes a bug that could cause sequences to be rejected incorrectly in the vector detection step (phase 6). Because of the way that lucy compares "tags" in the target sequence with "tags" in the vector sequence, some bases in the target sequence could get counted more than once in the tally of bases that match the vector sequence. In rare instances, this could cause the sequence to exceed the minimum threshold for rejection, as a result of random sequence similarity. The reporting of the CLB range in the -debug output file has also been changed. If the CLB range begins with the first base of the sequence, then the left coordinate of the CLB range will be reported as 1 (instead of 0). The range "CLB 0 0" still indicates an empty CLB range.
Revision 1.6 / (download) - annotate - [select for diffs], Fri Jun 12 19:07:29 2009 UTC (13 years, 11 months ago) by rillig
Branch: MAIN
CVS Tags: pkgsrc-2010Q2-base,
pkgsrc-2010Q2,
pkgsrc-2010Q1-base,
pkgsrc-2010Q1,
pkgsrc-2009Q4-base,
pkgsrc-2009Q4,
pkgsrc-2009Q3-base,
pkgsrc-2009Q3,
pkgsrc-2009Q2-base,
pkgsrc-2009Q2
Changes since 1.5: +5 -8
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Diff to previous 1.5 (colored)
Made the Makefile simpler. Removed unnecessary .gz suffix from man pages.
Revision 1.5 / (download) - annotate - [select for diffs], Sat May 16 23:40:13 2009 UTC (14 years ago) by zafer
Branch: MAIN
Changes since 1.4: +3 -3
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Diff to previous 1.4 (colored)
update homepage, update master site.
Revision 1.4 / (download) - annotate - [select for diffs], Mon Mar 3 01:10:06 2008 UTC (15 years, 3 months ago) by jlam
Branch: MAIN
CVS Tags: pkgsrc-2009Q1-base,
pkgsrc-2009Q1,
pkgsrc-2008Q4-base,
pkgsrc-2008Q4,
pkgsrc-2008Q3-base,
pkgsrc-2008Q3,
pkgsrc-2008Q2-base,
pkgsrc-2008Q2,
pkgsrc-2008Q1-base,
pkgsrc-2008Q1,
cwrapper,
cube-native-xorg-base,
cube-native-xorg
Changes since 1.3: +7 -5
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Diff to previous 1.3 (colored)
Mechanical changes to add full DESTDIR support to packages that install their files via a custom do-install target.
Revision 1.3 / (download) - annotate - [select for diffs], Sun Jan 7 09:13:48 2007 UTC (16 years, 4 months ago) by rillig
Branch: MAIN
CVS Tags: pkgsrc-2007Q4-base,
pkgsrc-2007Q4,
pkgsrc-2007Q3-base,
pkgsrc-2007Q3,
pkgsrc-2007Q2-base,
pkgsrc-2007Q2,
pkgsrc-2007Q1-base,
pkgsrc-2007Q1
Changes since 1.2: +3 -3
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Diff to previous 1.2 (colored)
Mechanically replaced man/* with ${PKGMANDIR}/* in the definition of
INSTALLATION_DIRS, as well as all occurrences of ${PREFIX}/man with
${PREFIX}/${PKGMANDIR}.
Fixes PR 35265, although I did not use the patch provided therein.
Revision 1.2 / (download) - annotate - [select for diffs], Wed Oct 4 20:47:03 2006 UTC (16 years, 7 months ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2006Q4-base,
pkgsrc-2006Q4
Changes since 1.1: +2 -2
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Diff to previous 1.1 (colored)
Update MASTER_SITES and/or HOMEPAGE, from Sergey Svishchev.
Revision 1.1.1.1 / (download) - annotate - [select for diffs] (vendor branch), Sat Mar 26 17:05:01 2005 UTC (18 years, 2 months ago) by minskim
Branch: TNF
CVS Tags: pkgsrc-base,
pkgsrc-2006Q3-base,
pkgsrc-2006Q3,
pkgsrc-2006Q2-base,
pkgsrc-2006Q2,
pkgsrc-2006Q1-base,
pkgsrc-2006Q1,
pkgsrc-2005Q4-base,
pkgsrc-2005Q4,
pkgsrc-2005Q3-base,
pkgsrc-2005Q3,
pkgsrc-2005Q2-base,
pkgsrc-2005Q2
Changes since 1.1: +0 -0
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Diff to previous 1.1 (colored)
Import lucy from pkgsrc-wip. Packaged by David Price and modified by me. A Sequence Cleanup Program. Lucy is a utility that prepares raw DNA sequence fragments for sequence assembly,possibly using the TIGR Assembler. The cleanup process includes quality assessment, confidence reassurance, vector trimming and vector removal. The primary advantage of Lucy over other similar utilities is that it is a fully integrated, stand alone program.
Revision 1.1 / (download) - annotate - [select for diffs], Sat Mar 26 17:05:01 2005 UTC (18 years, 2 months ago) by minskim
Branch: MAIN
Initial revision