CVS log for pkgsrc/biology/kallisto/distinfo
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Keyword substitution: kv
Default branch: MAIN
Revision 1.8: download - view: text, markup, annotated - select for diffs
Fri Sep 20 00:03:15 2024 UTC (7 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2025Q1-base,
pkgsrc-2025Q1,
pkgsrc-2024Q4-base,
pkgsrc-2024Q4,
pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
HEAD
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +3 -3
lines
biology/kallisto: Update to 0.51.1
Enhancements to ir-kallisto and pseudoalignments
Changes: https://github.com/pachterlab/kallisto/releases
Reported by: portscout
Revision 1.7: download - view: text, markup, annotated - select for diffs
Sat Jul 27 12:22:54 2024 UTC (8 months, 3 weeks ago) by bacon
Branches: MAIN
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +6 -6
lines
biology/kallisto: Update to 0.51.0,1
Add support for long reads to kallisto bus and kallisto quant-tcc
Changes: https://github.com/pachterlab/kallisto/releases
Reported by: portscout
Revision 1.6: download - view: text, markup, annotated - select for diffs
Sat Nov 4 14:35:07 2023 UTC (17 months, 2 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q2-base,
pkgsrc-2024Q2,
pkgsrc-2024Q1-base,
pkgsrc-2024Q1,
pkgsrc-2023Q4-base,
pkgsrc-2023Q4
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +13 -6
lines
biology/kallisto: Update to 0.50.1
Update kallisto index version to 13
A few other new features
Changes: https://github.com/pachterlab/kallisto/releases
Revision 1.5: download - view: text, markup, annotated - select for diffs
Sun Feb 27 01:57:27 2022 UTC (3 years, 1 month ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q3-base,
pkgsrc-2023Q3,
pkgsrc-2023Q2-base,
pkgsrc-2023Q2,
pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2,
pkgsrc-2022Q1-base,
pkgsrc-2022Q1
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +7 -4
lines
biology/kallisto: Update to 0.48.0
Long awaited bug fix release
Also unbundled htslib
Changes: https://github.com/pachterlab/kallisto/tags
Revision 1.4: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:03:40 2021 UTC (3 years, 5 months ago) by nia
Branches: MAIN
CVS tags: pkgsrc-2021Q4-base,
pkgsrc-2021Q4
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +2 -2
lines
biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
Revision 1.3: download - view: text, markup, annotated - select for diffs
Thu Oct 7 13:19:40 2021 UTC (3 years, 6 months ago) by nia
Branches: MAIN
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +1 -2
lines
biology: Remove SHA1 hashes for distfiles
Revision 1.2: download - view: text, markup, annotated - select for diffs
Thu Jul 23 19:22:00 2020 UTC (4 years, 8 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2,
pkgsrc-2021Q1-base,
pkgsrc-2021Q1,
pkgsrc-2020Q4-base,
pkgsrc-2020Q4,
pkgsrc-2020Q3-base,
pkgsrc-2020Q3
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +4 -6
lines
biology/kallisto: Upgrade to 0.46.1
Minor enhancements since 0.45
0.46.2 is available, but has serious regressions.
Reverted to bundled htslib 1.4.1, since kallisto source contains modified
htslib files that are incompatible with the current 1.10.2 package.
Revision 1.1: download - view: text, markup, annotated - select for diffs
Fri Dec 21 19:00:56 2018 UTC (6 years, 4 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2020Q2-base,
pkgsrc-2020Q2,
pkgsrc-2020Q1-base,
pkgsrc-2020Q1,
pkgsrc-2019Q4-base,
pkgsrc-2019Q4,
pkgsrc-2019Q3-base,
pkgsrc-2019Q3,
pkgsrc-2019Q2-base,
pkgsrc-2019Q2,
pkgsrc-2019Q1-base,
pkgsrc-2019Q1,
pkgsrc-2018Q4-base,
pkgsrc-2018Q4
biology/kallisto: import kallisto-0.45.0
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq
data, or more generally of target sequences using high-throughput sequencing
reads. It is based on the novel idea of pseudoalignment for rapidly determining
the compatibility of reads with targets, without the need for alignment.
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