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Default branch: MAIN
Revision 1.16 / (download) - annotate - [select for diffs], Thu Jan 19 18:52:03 2017 UTC (6 years, 8 months ago) by agc
Branch: MAIN
CVS Tags: pkgsrc-2023Q2-base,
pkgsrc-2023Q2,
pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2,
pkgsrc-2022Q1-base,
pkgsrc-2022Q1,
pkgsrc-2021Q4-base,
pkgsrc-2021Q4,
pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2,
pkgsrc-2021Q1-base,
pkgsrc-2021Q1,
pkgsrc-2020Q4-base,
pkgsrc-2020Q4,
pkgsrc-2020Q3-base,
pkgsrc-2020Q3,
pkgsrc-2020Q2-base,
pkgsrc-2020Q2,
pkgsrc-2020Q1-base,
pkgsrc-2020Q1,
pkgsrc-2019Q4-base,
pkgsrc-2019Q4,
pkgsrc-2019Q3-base,
pkgsrc-2019Q3,
pkgsrc-2019Q2-base,
pkgsrc-2019Q2,
pkgsrc-2019Q1-base,
pkgsrc-2019Q1,
pkgsrc-2018Q4-base,
pkgsrc-2018Q4,
pkgsrc-2018Q3-base,
pkgsrc-2018Q3,
pkgsrc-2018Q2-base,
pkgsrc-2018Q2,
pkgsrc-2018Q1-base,
pkgsrc-2018Q1,
pkgsrc-2017Q4-base,
pkgsrc-2017Q4,
pkgsrc-2017Q3-base,
pkgsrc-2017Q3,
pkgsrc-2017Q2-base,
pkgsrc-2017Q2,
pkgsrc-2017Q1-base,
pkgsrc-2017Q1,
HEAD
Changes since 1.15: +4 -4
lines
Diff to previous 1.15 (colored)
Convert all occurrences (353 by my count) of MASTER_SITES= site1 \ site2 style continuation lines to be simple repeated MASTER_SITES+= site1 MASTER_SITES+= site2 lines. As previewed on tech-pkg. With thanks to rillig for fixing pkglint accordingly.
Revision 1.15 / (download) - annotate - [select for diffs], Thu Oct 9 14:06:00 2014 UTC (8 years, 11 months ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2016Q4-base,
pkgsrc-2016Q4,
pkgsrc-2016Q3-base,
pkgsrc-2016Q3,
pkgsrc-2016Q2-base,
pkgsrc-2016Q2,
pkgsrc-2016Q1-base,
pkgsrc-2016Q1,
pkgsrc-2015Q4-base,
pkgsrc-2015Q4,
pkgsrc-2015Q3-base,
pkgsrc-2015Q3,
pkgsrc-2015Q2-base,
pkgsrc-2015Q2,
pkgsrc-2015Q1-base,
pkgsrc-2015Q1,
pkgsrc-2014Q4-base,
pkgsrc-2014Q4
Changes since 1.14: +1 -3
lines
Diff to previous 1.14 (colored)
Remove pkgviews: don't set PKG_INSTALLATION_TYPES in Makefiles.
Revision 1.14 / (download) - annotate - [select for diffs], Sun Jul 21 15:58:51 2013 UTC (10 years, 2 months ago) by wen
Branch: MAIN
CVS Tags: pkgsrc-2014Q3-base,
pkgsrc-2014Q3,
pkgsrc-2014Q2-base,
pkgsrc-2014Q2,
pkgsrc-2014Q1-base,
pkgsrc-2014Q1,
pkgsrc-2013Q4-base,
pkgsrc-2013Q4,
pkgsrc-2013Q3-base,
pkgsrc-2013Q3
Changes since 1.13: +6 -3
lines
Diff to previous 1.13 (colored)
Update to 3.0 Add LICENSE Add more distfile mirrors Upstream changelog please visit: http://selab.janelia.org/software/hmmer3/3.0/RELEASE-NOTES
Revision 1.13 / (download) - annotate - [select for diffs], Tue Sep 11 20:32:12 2012 UTC (11 years ago) by asau
Branch: MAIN
CVS Tags: pkgsrc-2013Q2-base,
pkgsrc-2013Q2,
pkgsrc-2013Q1-base,
pkgsrc-2013Q1,
pkgsrc-2012Q4-base,
pkgsrc-2012Q4,
pkgsrc-2012Q3-base,
pkgsrc-2012Q3
Changes since 1.12: +1 -2
lines
Diff to previous 1.12 (colored)
"user-destdir" is default these days
Revision 1.12 / (download) - annotate - [select for diffs], Wed Jul 8 15:20:04 2009 UTC (14 years, 2 months ago) by joerg
Branch: MAIN
CVS Tags: pkgsrc-2012Q2-base,
pkgsrc-2012Q2,
pkgsrc-2012Q1-base,
pkgsrc-2012Q1,
pkgsrc-2011Q4-base,
pkgsrc-2011Q4,
pkgsrc-2011Q3-base,
pkgsrc-2011Q3,
pkgsrc-2011Q2-base,
pkgsrc-2011Q2,
pkgsrc-2011Q1-base,
pkgsrc-2011Q1,
pkgsrc-2010Q4-base,
pkgsrc-2010Q4,
pkgsrc-2010Q3-base,
pkgsrc-2010Q3,
pkgsrc-2010Q2-base,
pkgsrc-2010Q2,
pkgsrc-2010Q1-base,
pkgsrc-2010Q1,
pkgsrc-2009Q4-base,
pkgsrc-2009Q4,
pkgsrc-2009Q3-base,
pkgsrc-2009Q3
Changes since 1.11: +2 -1
lines
Diff to previous 1.11 (colored)
user-destdir support
Revision 1.11 / (download) - annotate - [select for diffs], Sat May 16 23:28:13 2009 UTC (14 years, 4 months ago) by zafer
Branch: MAIN
CVS Tags: pkgsrc-2009Q2-base,
pkgsrc-2009Q2
Changes since 1.10: +2 -2
lines
Diff to previous 1.10 (colored)
fetch from gentoo mirror.
Revision 1.10 / (download) - annotate - [select for diffs], Sat May 16 23:19:19 2009 UTC (14 years, 4 months ago) by zafer
Branch: MAIN
Changes since 1.9: +3 -3
lines
Diff to previous 1.9 (colored)
update homepage and master site. new master needs active ftp. it doesn't work with EPSV. commented out.
Revision 1.9 / (download) - annotate - [select for diffs], Thu Feb 22 19:26:09 2007 UTC (16 years, 7 months ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2009Q1-base,
pkgsrc-2009Q1,
pkgsrc-2008Q4-base,
pkgsrc-2008Q4,
pkgsrc-2008Q3-base,
pkgsrc-2008Q3,
pkgsrc-2008Q2-base,
pkgsrc-2008Q2,
pkgsrc-2008Q1-base,
pkgsrc-2008Q1,
pkgsrc-2007Q4-base,
pkgsrc-2007Q4,
pkgsrc-2007Q3-base,
pkgsrc-2007Q3,
pkgsrc-2007Q2-base,
pkgsrc-2007Q2,
pkgsrc-2007Q1-base,
pkgsrc-2007Q1,
cwrapper,
cube-native-xorg-base,
cube-native-xorg
Changes since 1.8: +2 -2
lines
Diff to previous 1.8 (colored)
Whitespace cleanup, courtesy of pkglint. Patch provided by Sergey Svishchev in private mail.
Revision 1.8 / (download) - annotate - [select for diffs], Mon Dec 5 20:49:51 2005 UTC (17 years, 9 months ago) by rillig
Branch: MAIN
CVS Tags: pkgsrc-2006Q4-base,
pkgsrc-2006Q4,
pkgsrc-2006Q3-base,
pkgsrc-2006Q3,
pkgsrc-2006Q2-base,
pkgsrc-2006Q2,
pkgsrc-2006Q1-base,
pkgsrc-2006Q1,
pkgsrc-2005Q4-base,
pkgsrc-2005Q4
Changes since 1.7: +2 -2
lines
Diff to previous 1.7 (colored)
Fixed pkglint warnings. The warnings are mostly quoting issues, for
example MAKE_ENV+=FOO=${BAR} is changed to MAKE_ENV+=FOO=${BAR:Q}. Some
other changes are outlined in
http://mail-index.netbsd.org/tech-pkg/2005/12/02/0034.html
Revision 1.7 / (download) - annotate - [select for diffs], Mon Apr 11 21:45:01 2005 UTC (18 years, 5 months ago) by tv
Branch: MAIN
CVS Tags: pkgsrc-2005Q3-base,
pkgsrc-2005Q3,
pkgsrc-2005Q2-base,
pkgsrc-2005Q2
Changes since 1.6: +1 -2
lines
Diff to previous 1.6 (colored)
Remove USE_BUILDLINK3 and NO_BUILDLINK; these are no longer used.
Revision 1.6 / (download) - annotate - [select for diffs], Wed Dec 1 04:01:09 2004 UTC (18 years, 9 months ago) by minskim
Branch: MAIN
CVS Tags: pkgsrc-2005Q1-base,
pkgsrc-2005Q1,
pkgsrc-2004Q4-base,
pkgsrc-2004Q4
Changes since 1.5: +5 -4
lines
Diff to previous 1.5 (colored)
Update hmmer to 2.3.2. Patch provided by David Price in PR pkg/28483.
While here, enable pkgviews installation.
Changes:
-:- hmmsearch intermittently failed on Swissprot searches, on some
platforms (reports on AMD/Linux; Mac OS/X). (#h25)
-:- hmmpfam memory allocation strategy did not guarantee RAMLIMIT,
and could explode to very large allocations when searching
with large sequences. (#h26)
-:- technical improvements in handing dsq's (digitized sequences);
"bug" has no visible effects, except when compiling on
different platforms. (#h27)
-:- typo fix in P7Forward() recursion; typo may have had minor
effect on calculated scores. (#h28)
-:- hmmalign now includes --outformat and --oneline option for
specifying different output alignment formats than the default
Stockholm.
Revision 1.5 / (download) - annotate - [select for diffs], Mon Aug 16 02:47:49 2004 UTC (19 years, 1 month ago) by ben
Branch: MAIN
CVS Tags: pkgsrc-2004Q3-base,
pkgsrc-2004Q3
Changes since 1.4: +3 -1
lines
Diff to previous 1.4 (colored)
Make hmmer honor $MKDIR for cross-platform install. Addresses pr#26650 from Georg Schwarz.
Revision 1.4 / (download) - annotate - [select for diffs], Sun Apr 11 04:06:09 2004 UTC (19 years, 5 months ago) by snj
Branch: MAIN
CVS Tags: pkgsrc-2004Q2-base,
pkgsrc-2004Q2
Changes since 1.3: +2 -2
lines
Diff to previous 1.3 (colored)
Convert to buildlink3 and correct a spelling error in DESCR.
Revision 1.3 / (download) - annotate - [select for diffs], Tue Jan 20 12:08:40 2004 UTC (19 years, 8 months ago) by agc
Branch: MAIN
CVS Tags: pkgsrc-2004Q1-base,
pkgsrc-2004Q1
Changes since 1.2: +2 -2
lines
Diff to previous 1.2 (colored)
Move WRKSRC definition away from the first paragraph in a Makefile.
Revision 1.2 / (download) - annotate - [select for diffs], Fri Sep 26 05:21:04 2003 UTC (20 years ago) by wiz
Branch: MAIN
CVS Tags: pkgsrc-2003Q4-base,
pkgsrc-2003Q4
Changes since 1.1: +2 -2
lines
Diff to previous 1.1 (colored)
Add trailing slash to HOMEPAGE to placate pkglint.
Revision 1.1.1.1 / (download) - annotate - [select for diffs] (vendor branch), Fri Sep 26 03:52:47 2003 UTC (20 years ago) by jschauma
Branch: TNF
CVS Tags: pkgsrc-base
Changes since 1.1: +0 -0
lines
Diff to previous 1.1 (colored)
Initial import of hmmer, one of the many packages provided by brook at biology dot nmsu dot edu and his team at NMSU. HMMER is an implementation of profile HMM methods for sensitive database searches using multiple sequence alignments as queries. HMMER takes multiple sequence alignement as input and builds statistical model called "Hidden Markov Model" which can be used as a query into a sequence database to find and/or align additional homologues of the sequence family.
Revision 1.1 / (download) - annotate - [select for diffs], Fri Sep 26 03:52:47 2003 UTC (20 years ago) by jschauma
Branch: MAIN
Initial revision