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File: [cvs.NetBSD.org] / pkgsrc / biology / hisat2 / Makefile (download)

Revision 1.5, Fri Dec 4 20:45:00 2020 UTC (3 years, 4 months ago) by nia
Branch: MAIN
CVS Tags: pkgsrc-2021Q1-base, pkgsrc-2021Q1, pkgsrc-2020Q4-base, pkgsrc-2020Q4
Changes since 1.4: +2 -2 lines 

Revbump packages with a runtime Python dep but no version prefix.

For the Python 3.8 default switch.

# $NetBSD: Makefile,v 1.5 2020/12/04 20:45:00 nia Exp $

DISTNAME=	hisat2-2.1.0.23
PKGREVISION=	4
CATEGORIES=	biology
MASTER_SITES=	${MASTER_SITE_GITHUB:=infphilo/}
GITHUB_TAG=	20f333e2cfe7ff4d1362b248912893e2644683d7

MAINTAINER=	bacon@NetBSD.org
HOMEPAGE=	https://ccb.jhu.edu/software/hisat2/index.shtml
COMMENT=	Alignment program for mapping next-generation sequencing reads
LICENSE=	gnu-gpl-v3

# 64-bit code, some assembly language
ONLY_FOR_PLATFORM=	*-*-x86_64

USE_LANGUAGES=	c c++
USE_TOOLS+=	bash gmake perl

REPLACE_BASH=		hisatgenotype_scripts/*.sh
REPLACE_PERL=		hisat2 scripts/*.sh scripts/*.pl
REPLACE_PYTHON=		*.py hisat2-build hisat2-inspect
REPLACE_PYTHON+=	hisatgenotype_modules/*.py hisatgenotype_scripts/*.py

MAKE_FILE=		${FILESDIR}/Makefile.pkg
PTHREAD_AUTO_VARS=	yes

.include "../../lang/python/application.mk"
.include "../../mk/pthread.buildlink3.mk"
.include "../../mk/bsd.pkg.mk"