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gnome-chemistry-utils: remove dead upstream, development stopped 5 years ago.
biology: Replace RMD160 checksums with BLAKE2s checksums All checksums have been double-checked against existing RMD160 and SHA512 hashes
biology: Remove SHA1 hashes for distfiles
gnome-chemistry-utils: Update to 0.14.16 Changelog: Version 0.14.16: GChemPaint: * Do not show buttons for non yet implemented tools. Version 0.14.15: GCCV library: * Don't use the abs() function on unsigned numbers. Other: * Updated appdata files. Version 0.14.14: Mozilla plugin: * Fix build. Version 0.14.13: GChemPaint: * Optional use of Lasem to display maths. * Fix rendering with gtk+ >= 3.20. * Fix crash with atom charges larger than 1. * Fix crash when deleting a bond outside a molecule. [#48256] Gnumeric plugin: * Add monoisotopicmass function in gnumeric and more. Databases: * Update names for elements 113, 115, 117 and 118. Version 0.14.12: GChemPaint: * Enhanced Chemdraw formats support. [sr #108952] * Optional use of Lasem to display maths. * Fix rendering with gtk+ >= 3.20. GChemCalc: * Don't crash on "Ac" string. [#47366] Version 0.14.11: GChemPaint: * Fix an infinite loop condition in retrosyntheses alignment. * Don't crash when importing an invalid string. [Redhat bug #1285154] * Fix drawing when zoomed. * Fix various runtime errors. * Fix crash when creating a reaction with no product. * Enhanced Chemdraw formats support. * Fix embedding of a whole molecule inside brackets. [#47224] GChemTable: * Don't crash when showing an already existing chart. [Redhat bug #1302135] GCrystal: * Fix build with gcc-6. [Redhat bug #1307546] GCrystal and GChem3D: * Don't crash when rendering to memory (images and print). [#47169] Other: * Added keywords to desktop files. * Updated appdata files. Version 0.14.10: GChemPaint: * Fix an object bounds issue. Mozilla plugin: * Supports the npapi-sdk package as requirement. Other: * Fixed typos in appdata files. Version 0.14.9: GChemPaint: * Ensure that the document size is always updated. [#43091] 3d viewer and GCrystal: * Fix rotation. [#42977] (patch from Toni Andjelkovic) All applications: * Add appdata files. Version 0.14.8 GChemPaint: * Fix drawing with Gtk+ >= 3.10. Version 0.14.7 GCrystal: * Fix crash in dialogs with recent Gtk+. Mozilla plugin: * Fix crashers for 2D and 3D molecules. Version 0.14.6 3d viewer: * Avoid empty entries in recent list. CGchemPaint: * Restore .mol files support. * Fix CML import (also affected 3d viewer and >GCrystal). * Fix BMP export. GCrystal: * Fix test order in lines code. [#41261] GSpectrum: * Fix access to uninitialized data. * Don' double free a string. GOffice component: * Don't crash when editing after saving a GChemPaint object. Mozilla plugin: * Fix supported mime-types list. (see Debian bug #716961) Other: * Fix build on FreeBSD (Koop Mast). [#41256] Version 0.14.5 GChemPaint: * Make adding template work again. Version 0.14.4 GChemPaint: * Do not use a NULL atom properties. [#40194] Version 0.14.3 GChemPaint: * Really close the window on delete event. * Don't crash when aligning ungrouped objects. GChemTable: * Fix crash when using masses in a graph. * Fix graph behavior after edition. All: * Make sure to not create a C++ locale from a NULL string. Version 0.14.2 GChemPaint: * Fix crash when loading some molecules (was introduced in 0.14.1). Version 0.14.1 GChemPaint: * Do not allow a mesomery destruction when inside a reaction. * Fix molecule deletion inside a mesomery. * Fix reactant deletion inside a reaction. * Don't crash when a mesomery inside a reaction is destroyed. * Check molecule consistency when loading, avoids a stack overflow. * Enhanced representaion of chiral molecules imported from CML and other formats. * Fix crash when deleting a cyclic bond. GCrystal: * Fix row selection operations order in grids. Version 0.14.0 GChemPaint: * Fix reaction construction. * Fix non bonding electron pairs. Version 0.13.99 GChemPaint: * Fix squiggle bonds period. * Allow brackets around a mesomery. * Allow a mesomery inside a reaction. * Fixed some meomory access issues. * Fixed crash when loading a group. * Fixed mesomery construction. * Fixed crash when ungrouping. Version 0.13.98 GChemPaint: * Don't freeze after an aborted molecules merge. * Initialize the bond order for the Newman projection tool. * Don't crash when adding brackets around a fragment. * Fix undoing a molecule partial flip. * Fix bracket stoichiometry index position after a transform. * Fix explicit lone pairs count evaluation. Version 0.13.92 GChemCalc * Updated the documentation. GChemPaint: * Fix View::BuildSVG() and View::BuildEPS() which were missing the trailing 0. * Fix misleading error message while saving. * Fix loading of arrows inside a group. [#27032] GCrystal: * Apply element change to all slected atoms. * Updated the documentation. GSpectrum: * Add "Response factor" as supported unit. * Fixed widgets spacing. * Updated the documentation. GChemTable: * Updated the documentation. Version 0.13.91 3d viewer: * Show all menu items when a molecule is loaded from the command line. * Updated user documentation. GChemPaint: * Don't crash on startup. All: * Fix localization issues. * Fixed modal message boxes behavior. Version 0.13.90 3d viewer: * Fix import from pdb files. [#36582] GCrystal: * Fix infinite loop condition. [#36583] * Fix atomic radius change issue. GChemTable: * Fix languages translation. Version 0.13.7 GChemPaint: * Fixed crash when selecting the alignment item inside a mechanism step. [#35626] GCrystal: * Fixed loading CIF files using uptodate space groups descriptions. Other: * License is now GPL version 3 (except for the OpenBabel related code). * Fix build on big endian machines (Dan Horak). [#36175] * Updated API documentation. Version 0.13.6 GChemPaint: * fixed text position serialization. [#34947] * add some support for Newman projections. * accept some multisteps reactions. Goffice component: * Add support for 3D molecular structures. Other: * Fixed pixmaps installation directory. [#35272] * fixed build with ->l,--no-undefined. [patch #7677] Version 0.13.5 3d viewer: * Import from InChI or SMILES. * Export to GChemPaint and GChemCalc. * Generates InChI, InChiKey and SMILES. * Add access to databases. GChemPaint: * Brackets inside a molecule accept a stoichiometry coefficient. GCrystal: * Use multiple selection in atoms and lines dialogs. GSpectrum: * Allow markup in combo boxes and axes titles. Goffice component: * Add support for crystal structures. Other: * Fixed one more OpenGL related crasher. Version 0.13.4 All: * Ported to Gtk+-3.0. GCrystal: * Use the new GcrGrid item in atoms, lines and cleavages dialogs. * Make these and size dialogs instant apply. GChemTable: * Use a more complete tip window for elements. Version 0.13.3 GChemPaint: * Fixed build with gcc-4.6. [#32363] * Allow colored atomic symbols on a per-document basis. * Brackets tool now working, not perfectly though. Other: * Don't use POLLRDHUP when not defined. [#32768] * Split libgcu so that libgcu itself never calls gtk+ directly. Version 0.13.2 GChemPaint: * Do not allow document changes using keyboard while dragging the mouse. [#31812] * Don't add new molecules when undoing a mechanism arrow deletion. [#32433] * Removed the Wikipedia tool which was obsolete. * Reorganized molecule contextual menu with new 3D options and databases access. Other: * OpenBabel support has been moved to a separate process and greatly enhanced, specially for 3D export from gchempaint. * A lot of bugs have been fixed. Version 0.13.1 GSpectrum: * Loads NUTS files. * Transforms FID to spectrum. Version 0.13.0 GChemPaint: * New "lasso" tool to allow partial selections. * New "brackets" tool (doesn't work yet). Other: * libgcr: new library for GCrystal. * Fixed all bugs discovered in the 0.12 banch.
Add SHA512 digests for distfiles for biology category. Existing SHA1 digests verified, all found to be the same on the machine holding the existing distfiles (morden). Existing SHA1 digests retained for now as an audit trail.
Fix "call of overloaded 'abs(unsigned int)' is ambiguous".
Fix missing include. Don't use libstdc++ implementation detail. Free correct variable. Bump revision.
Update to 0.12.13
Changelog:
Version 0.12.13
GChemPaint:
* Fix View::BuildSVG() and View::BuildEPS() which were missing the
trailing 0.
* Fix loading of arrows inside a group. [#27032]
Update to 0.12.12
Changelog:
Version 0.12.12
GCrystal:
* Fix atoms loading.
* Fix infinite loop condition. [#36583]
Version 0.12.11
GChemPaint:
* fixed text position serialization. [#34947]
* fixed crash when selecting the alignment item inside a mechanism
step. [#35626]
Update to 0.12.10
Changelog:
Version 0.12.10
GCrystal:
* show only atoms from the first crystal when loading a CIF file
with several structures.
* don't crash when loading a file with invalid atoms.
* don't display two atoms at the same position.
* don't loose the radius ratio on serialization.
Other:
* fix build with most recent glib-2.0 and xulrunner.
* enhanced translation: de.
Initial import of gnome-chemistry-utils-0.12.9 from wip/gnome-chemistry-utils GChemPaint, a 2D chemical editor and some other programs related to chemistry suitable for the GNOME desktop. The Gnome Chemistry Utils include three utilities: - a 2D chemical editor (GChemPaint). - a chemical calculator (computes raw formule, molar weight, mass composition, etc..) and isotopic pattern). - a molecule 3d viewer using OpenGL to display molecular models. - a crystal structues viewer and editor. - a periodic table of the elements. - a spectrum viewer. These programs are based on an included C++ library which provides a few widgets and various classes, some related to chemistry and some utility classes.
Initial revision