CVS log for pkgsrc/biology/glimmer/distinfo

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biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes

biology: Remove SHA1 hashes for distfiles

Add SHA512 digests for distfiles for biology category.

Existing SHA1 digests verified, all found to be the same on the
machine holding the existing distfiles (morden).  Existing SHA1
digests retained for now as an audit trail.

Add RMD160 digests in addition to the SHA1 ones.

Update to glimmer-2.13, thanks to cngo@nmsu.edu.

CHANGELOG, 12 October 2003
    add -X option to glimmer2, to allow orfs extending off ends of
    sequence to be scored.  Also fix bug affecting -p and -o options
    when user chose zero overlap.

Apply patches from Tyler Retzlaff in PR pkg/23083 to make this behave with
gcc3.  While here, update to version 2.12 (previous version was erraneously
named 2.1, when it should have been 2.10) which is the only distfile
available on the ftp site.
Changelog seems to say:
   - Fix bug on long-orfs.cc to avoid occasional array out-of-bounds
	error (detected on Mac OS X).

Initial import of glimmer, one of the many packages provided by
brook at biology dot nmsu dot edu and his team at NMSU.

Glimmer (Gene Locator and Interpolated Markov Modeler) is a system for finding
genes in microbial DNA, especially the genomes of bacteria and archaea.
Glimmer uses interpolated Markov models (IMMs) to identify the coding regions
and  distinguish them from noncoding DNA. The IMM approach uses a combination
of Markov models from 1st through 8th-order, weighting each model according to
its predictive power. 

Initial revision