CVS log for pkgsrc/biology/canu/distinfo
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Default branch: MAIN
Revision 1.7: download - view: text, markup, annotated - select for diffs
Sat May 20 14:42:11 2023 UTC (18 months, 1 week ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
pkgsrc-2024Q2-base,
pkgsrc-2024Q2,
pkgsrc-2024Q1-base,
pkgsrc-2024Q1,
pkgsrc-2023Q4-base,
pkgsrc-2023Q4,
pkgsrc-2023Q3-base,
pkgsrc-2023Q3,
pkgsrc-2023Q2-base,
pkgsrc-2023Q2,
HEAD
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +0 -2
lines
biology/canu: Fix build on Darwin aarch64
Replace SIMDE with upstream source hacks from FreeBSD port
Should also work on powerpc, but untested
No changes to existing binaries
Revision 1.6: download - view: text, markup, annotated - select for diffs
Sat May 20 11:27:27 2023 UTC (18 months, 1 week ago) by bacon
Branches: MAIN
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +1 -1
lines
biology/canu: Hacks to support Darwin x86
OpenMP support needs improvement
Darwin aarch64 still blocked by glib2 build issues
No changes to binaries on other platforms
Revision 1.5: download - view: text, markup, annotated - select for diffs
Thu May 18 18:17:32 2023 UTC (18 months, 2 weeks ago) by bacon
Branches: MAIN
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +13 -8
lines
biology/canu: Update to 2.2
Numerous new features, enhancements, and bug fixes since 1.8
Enabled support for aarch64
May work on other 64-bit platforms, but untested
Changes: https://github.com/marbl/canu/releases
Revision 1.4: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:03:37 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
CVS tags: pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2,
pkgsrc-2022Q1-base,
pkgsrc-2022Q1,
pkgsrc-2021Q4-base,
pkgsrc-2021Q4
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +2 -2
lines
biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
Revision 1.3: download - view: text, markup, annotated - select for diffs
Thu Oct 7 13:19:37 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +1 -2
lines
biology: Remove SHA1 hashes for distfiles
Revision 1.2: download - view: text, markup, annotated - select for diffs
Sat May 16 19:50:21 2020 UTC (4 years, 6 months ago) by rillig
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2,
pkgsrc-2021Q1-base,
pkgsrc-2021Q1,
pkgsrc-2020Q4-base,
pkgsrc-2020Q4,
pkgsrc-2020Q3-base,
pkgsrc-2020Q3,
pkgsrc-2020Q2-base,
pkgsrc-2020Q2
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +2 -1
lines
biology/canu: fix build on NetBSD-8.0-x86_64
Revision 1.1: download - view: text, markup, annotated - select for diffs
Mon Jan 7 02:33:17 2019 UTC (5 years, 10 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2020Q1-base,
pkgsrc-2020Q1,
pkgsrc-2019Q4-base,
pkgsrc-2019Q4,
pkgsrc-2019Q3-base,
pkgsrc-2019Q3,
pkgsrc-2019Q2-base,
pkgsrc-2019Q2,
pkgsrc-2019Q1-base,
pkgsrc-2019Q1
biology/canu: import canu-1.8
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule
sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
Detect overlaps in high-noise sequences using MHAP
Generate corrected sequence consensus
Trim corrected sequences
Assemble trimmed corrected sequences
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