pkgsrc/biology/canu/Makefile - view

File: [cvs.NetBSD.org] / pkgsrc / biology / canu / Makefile
Revision 1.16: download - view: text, annotated - select for diffs
Tue Jun 28 11:31:00 2022 UTC (2 years, 5 months ago) by wiz
Branches: MAIN
CVS tags: pkgsrc-2022Q4-base, pkgsrc-2022Q4, pkgsrc-2022Q3-base, pkgsrc-2022Q3, HEAD

*: recursive bump for perl 5.36

# $NetBSD: Makefile,v 1.16 2022/06/28 11:31:00 wiz Exp $ DISTNAME= canu-1.8 PKGREVISION= 13 CATEGORIES= biology java MASTER_SITES= ${MASTER_SITE_GITHUB:=marbl/} GITHUB_TAG= v${PKGVERSION_NOREV} MAINTAINER= bacon@NetBSD.org HOMEPAGE= https://canu.readthedocs.io/ COMMENT= Single molecule sequence assembler for genomes large and small LICENSE= gnu-gpl-v2 DEPENDS+= gnuplot>0:../../graphics/gnuplot # Makefile compiles directly into ${DESTDIR}${PREFIX} SUBST_CLASSES+= optimize SUBST_STAGE.optimize= pre-configure SUBST_SED.optimize+= -e 's|-g3||g' SUBST_SED.optimize+= -e 's|-O3||g' SUBST_SED.optimize+= -e 's|-O4||g' SUBST_SED.optimize+= -e 's|-funroll-loops||g' SUBST_SED.optimize+= -e 's|-fexpensive-optimizations||g' SUBST_SED.optimize+= -e 's|-finline-functions||g' SUBST_FILES.optimize+= Makefile SUBST_CLASSES+= jar SUBST_STAGE.jar= pre-configure SUBST_SED.jar+= -e 's|\\$$bin/\.\./share/java/classes/mhap-|${PREFIX}/${JAVAJARDIR}/mhap-|g' SUBST_FILES.jar+= pipelines/canu/OverlapMhap.pm SUBST_CLASSES+= perl SUBST_STAGE.perl= pre-configure SUBST_SED.perl+= -e 's|$$FindBin::RealBin/../lib/site_perl|${PREFIX}/${SITE_PERL_REL}|g' SUBST_FILES.perl+= pipelines/canu.pl REPLACE_PERL+= *.pl */*.pl # May work on other 64-bit processors, but untested ONLY_FOR_PLATFORM= *-*-x86_64 USE_LANGUAGES= c c++ USE_JAVA= run USE_JAVA2= 8 USE_TOOLS+= gmake pax perl GCC_REQD+= 4.8 WRKSRC= ${WRKDIR}/canu-${PKGVERSION_NOREV}/src MAKE_ENV+= DESTDIR=${WRKSRC} TMP_INST= ${WRKSRC}${PREFIX}/${OPSYS}-${MACHINE_ARCH:S/x86_64/amd64/} SITE_PERL_REL= lib/perl5/site_perl JAVAJARDIR= share/java/classes INSTALLATION_DIRS= bin ${JAVAJARDIR} post-extract: ${CHMOD} -R g-w ${WRKDIR}/${DISTNAME} post-build: ${MKDIR} ${TMP_INST}/lib/perl5 ${MV} ${TMP_INST}/lib/site_perl ${TMP_INST}/lib/perl5 ${RM} -f ${TMP_INST}/bin/canu.defaults do-install: cd ${TMP_INST}/bin && ${PAX} -wr * ${DESTDIR}${PREFIX}/bin cd ${TMP_INST}/lib/perl5 && ${PAX} -wr * ${DESTDIR}${PREFIX}/lib/perl5 cd ${TMP_INST}/share && ${PAX} -wr * ${DESTDIR}${PREFIX}/share .include "../../devel/boost-libs/buildlink3.mk" .include "../../lang/perl5/module.mk" .include "../../mk/bsd.pkg.mk"