CVS log for pkgsrc/biology/bowtie2/distinfo
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Default branch: MAIN
Revision 1.8: download - view: text, markup, annotated - select for diffs
Fri May 24 11:32:58 2024 UTC (6 months, 1 week ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
pkgsrc-2024Q2-base,
pkgsrc-2024Q2,
HEAD
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +3 -3
lines
biology/bowtie2: Update to 2.5.4
A few bug fixes and minor enhancements
Changes: https://github.com/BenLangmead/bowtie2/releases
Revision 1.7: download - view: text, markup, annotated - select for diffs
Thu Jan 18 23:30:12 2024 UTC (10 months, 1 week ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q1-base,
pkgsrc-2024Q1
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +3 -3
lines
biology/bowtie2: Update to 2.5.3
A few bug fixes
Add option for faster indexing of small indexes
Changes: https://github.com/BenLangmead/bowtie2/releases
Reported by: portscout
Revision 1.6: download - view: text, markup, annotated - select for diffs
Wed Oct 18 13:34:23 2023 UTC (13 months, 2 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q4-base,
pkgsrc-2023Q4
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +3 -3
lines
biology/bowtie2: Update to 2.5.2
Numerous bug fixes and enhancements since 2.4.4
Changes: https://github.com/BenLangmead/bowtie2/releases
Revision 1.5: download - view: text, markup, annotated - select for diffs
Thu May 18 14:16:27 2023 UTC (18 months, 2 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q3-base,
pkgsrc-2023Q3,
pkgsrc-2023Q2-base,
pkgsrc-2023Q2
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +0 -0
lines
biology/bowtie2: Add support for aarch64 via devel/simde
May also work on other 64-bit architectures, but untested
Revision 1.4: download - view: text, markup, annotated - select for diffs
Fri Dec 17 15:25:20 2021 UTC (2 years, 11 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2,
pkgsrc-2022Q1-base,
pkgsrc-2022Q1,
pkgsrc-2021Q4-base,
pkgsrc-2021Q4
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +5 -5
lines
biology/bowtie2: Update to 2.4.4
Replaced TBB with C++ threads
Support for Apple M1
Several other fixes and enhancements
Changes: https://github.com/BenLangmead/bowtie2/tags
Revision 1.3: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:03:37 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +2 -2
lines
biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
Revision 1.2: download - view: text, markup, annotated - select for diffs
Thu Oct 7 13:19:37 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +1 -2
lines
biology: Remove SHA1 hashes for distfiles
Revision 1.1: download - view: text, markup, annotated - select for diffs
Thu Jan 21 17:30:12 2021 UTC (3 years, 10 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2,
pkgsrc-2021Q1-base,
pkgsrc-2021Q1
biology/bowtie2: import bowtie2-2.4.2
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour.
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