CVS log for pkgsrc/biology/biolibc/distinfo
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Default branch: MAIN
Revision 1.16: download - view: text, markup, annotated - select for diffs
Sun May 19 12:54:59 2024 UTC (6 months, 1 week ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
pkgsrc-2024Q2-base,
pkgsrc-2024Q2,
HEAD
Diff to: previous 1.15: preferred, colored
Changes since revision 1.15: +3 -3
lines
biology/biolibc: Update to 0.2.6.4
bl_sam_copy(): Make sure all fields are properly initialized
Revision 1.15: download - view: text, markup, annotated - select for diffs
Sat Oct 28 20:31:40 2023 UTC (13 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q1-base,
pkgsrc-2024Q1,
pkgsrc-2023Q4-base,
pkgsrc-2023Q4
Diff to: previous 1.14: preferred, colored
Changes since revision 1.14: +3 -3
lines
biology/biolibc: Update to 0.2.6
Updates for libxtend 0.2.0 API
Add full list of functions to biolibc(3) man page
Other documentation improvements
Changes: https://github.com/auerlab/biolibc/releases
Revision 1.14: download - view: text, markup, annotated - select for diffs
Sat Aug 12 14:49:18 2023 UTC (15 months, 2 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q3-base,
pkgsrc-2023Q3
Diff to: previous 1.13: preferred, colored
Changes since revision 1.13: +3 -3
lines
biology/biolibc: Update to 0.2.5
Make header files C++ compatible (extern C)
bl_chrom_name_cmp(): Support names with embedded digits, e.g. chr2p
bl_gff_extract_attribute(): Improve performance
gff -> gff3 to distinguish from past and future GFF specs
Silence some compiler warnings
Changes: https://github.com/auerlab/biolibc/releases
Revision 1.13: download - view: text, markup, annotated - select for diffs
Wed Jun 14 18:41:24 2023 UTC (17 months, 2 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q2-base,
pkgsrc-2023Q2
Diff to: previous 1.12: preferred, colored
Changes since revision 1.12: +3 -3
lines
biology/biolibc: Update to 0.2.4.3
Add extern "C" to support use from C++ apps
Revision 1.12: download - view: text, markup, annotated - select for diffs
Sun Dec 11 21:14:37 2022 UTC (23 months, 3 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4
Diff to: previous 1.11: preferred, colored
Changes since revision 1.11: +3 -3
lines
biology/biolibc: Update to 0.2.4
Minor enhancements
Changes: https://github.com/auerlab/biolibc/releases
Revision 1.11: download - view: text, markup, annotated - select for diffs
Sat Jun 11 19:42:39 2022 UTC (2 years, 5 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2
Diff to: previous 1.10: preferred, colored
Changes since revision 1.10: +3 -3
lines
biology/biolibc: Update to 0.2.3
Expand use of tsv_read_field_malloc() to improve memory efficiency
Add SAM bit flag constants
Import SAM-GFF compare functions from diffanal
Updates for libxtend DSV API changes
Numerous minor bug fixes and enhancements
Changes: https://github.com/auerlab/biolibc/releases
Revision 1.10: download - view: text, markup, annotated - select for diffs
Tue Mar 15 21:06:32 2022 UTC (2 years, 8 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2022Q1-base,
pkgsrc-2022Q1
Diff to: previous 1.9: preferred, colored
Changes since revision 1.9: +3 -3
lines
biology/biolibc: Update to 0.2.2
Numerous bug fixes and enhancements
Serveral new functions
3 new classes
Cleaned up some API slop
Changes: https://github.com/auerlab/biolibc/tags
Revision 1.9: download - view: text, markup, annotated - select for diffs
Tue Dec 14 18:58:57 2021 UTC (2 years, 11 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q4-base,
pkgsrc-2021Q4
Diff to: previous 1.8: preferred, colored
Changes since revision 1.8: +4 -4
lines
biology/biolibc: Update to 0.2.1
Add orf.c with start/stop codon locators
Standardize BED and GFF APIs
Implement VCF input filtering
Eliminate mutator macros mirroring mutator functions
Numerous minor bug fixes and enhancements
Changes: https://github.com/auerlab/biolibc/releases/tag/0.2.1
Revision 1.8: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:03:37 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +2 -2
lines
biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
Revision 1.7: download - view: text, markup, annotated - select for diffs
Thu Oct 7 13:19:37 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +1 -2
lines
biology: Remove SHA1 hashes for distfiles
Revision 1.6: download - view: text, markup, annotated - select for diffs
Sat Sep 18 00:42:39 2021 UTC (3 years, 2 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base,
pkgsrc-2021Q3
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +4 -4
lines
biology/biolibc: Update to 0.2.0.11
Regenerate man pages with improved auto-c2man
Improved formatting and added missing return value sections
Revision 1.5: download - view: text, markup, annotated - select for diffs
Fri Sep 3 01:53:52 2021 UTC (3 years, 2 months ago) by bacon
Branches: MAIN
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +4 -4
lines
biology/biolibc: Update to 0.2.0.1
Fix regression: Replace BL_BED_SET_STRAND() macro with
bl_bed_set_strand(), which performs sanity checks
Revision 1.4: download - view: text, markup, annotated - select for diffs
Sat Aug 28 18:34:37 2021 UTC (3 years, 3 months ago) by bacon
Branches: MAIN
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +4 -4
lines
biology/biolibc: Update to 0.2.0
Major API overhaul
New classes for FASTA and FASTQ
Generate accessor and mutator functions for all classes
Generate man pages for all functions and macros
Export delimiter-separated-value class to libxtend
Revision 1.3: download - view: text, markup, annotated - select for diffs
Tue Jun 15 13:47:46 2021 UTC (3 years, 5 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q2-base,
pkgsrc-2021Q2
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +4 -4
lines
biology/biolibc: Update to 0.1.3.2
Add LDFLAGS to allow RELRO
Revision 1.2: download - view: text, markup, annotated - select for diffs
Fri Jun 11 17:04:55 2021 UTC (3 years, 5 months ago) by bacon
Branches: MAIN
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +4 -4
lines
biology/biolibc: Update to 0.1.3
Import sam_buff_t class and VCF functions from ad2vcf
Add BED and GFF support
Isolate headers under include/biolibc
Numerous small enhancements and fixes
Upstream change log: https://github.com/auerlab/biolibc/releases
Revision 1.1: download - view: text, markup, annotated - select for diffs
Wed Mar 24 15:20:08 2021 UTC (3 years, 8 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q1-base,
pkgsrc-2021Q1
biology/biolibc: import biolibc-0.1.1
Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data. Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications. These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.
CVSweb <webmaster@jp.NetBSD.org>