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CVS log for pkgsrc/biology/biolibc-tools/distinfo

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Keyword substitution: kv
Default branch: MAIN

Revision 1.12: download - view: text, markup, annotated - select for diffs
Sun Oct 29 22:58:03 2023 UTC (13 months, 1 week ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base, pkgsrc-2024Q3, pkgsrc-2024Q2-base, pkgsrc-2024Q2, pkgsrc-2024Q1-base, pkgsrc-2024Q1, pkgsrc-2023Q4-base, pkgsrc-2023Q4, HEAD
Diff to: previous 1.11: preferred, colored
Changes since revision 1.11: +3 -3 lines
biology/biolibc-tools: Update to 0.1.4.13

Updates for new libxtend API
Revision 1.11: download - view: text, markup, annotated - select for diffs
Sat Aug 12 14:51:02 2023 UTC (15 months, 4 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q3-base, pkgsrc-2023Q3
Diff to: previous 1.10: preferred, colored
Changes since revision 1.10: +3 -3 lines
biology/biolibc-tools: Update to 0.1.4.9

Updates for biolibc GFF3 API changes
Revision 1.10: download - view: text, markup, annotated - select for diffs
Wed Jun 14 18:43:33 2023 UTC (17 months, 3 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q2-base, pkgsrc-2023Q2
Diff to: previous 1.9: preferred, colored
Changes since revision 1.9: +3 -3 lines
biology/biolibc-tools: Update to 0.1.4.6

Improvements to deromanize
Updates for libxtend API changes
Revision 1.9: download - view: text, markup, annotated - select for diffs
Sun May 21 12:20:46 2023 UTC (18 months, 3 weeks ago) by bacon
Branches: MAIN
Diff to: previous 1.8: preferred, colored
Changes since revision 1.8: +3 -3 lines
biology/biolibc-tools: Update to 0.1.4.3

deromanize: Take optional input filename, improve robustness
Revision 1.8: download - view: text, markup, annotated - select for diffs
Wed Dec 14 00:23:19 2022 UTC (23 months, 3 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2023Q1-base, pkgsrc-2023Q1, pkgsrc-2022Q4-base, pkgsrc-2022Q4
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +3 -3 lines
biology/biolibc-tools: Update to 0.1.4.1

deromanize:

Check for NULL field to prevent crash in some situations
Take optional input file as second argument
Revision 1.7: download - view: text, markup, annotated - select for diffs
Tue Dec 13 00:53:43 2022 UTC (23 months, 4 weeks ago) by bacon
Branches: MAIN
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +3 -3 lines
biology/biolibc-tools: Update to 0.1.4

Add deromanize subcommand to convert Roman numeral chromosome IDs
fastx-stats: Report standard deviation for read length

Changes:    https://github.com/auerlab/biolibc-tools/releases
Revision 1.6: download - view: text, markup, annotated - select for diffs
Sat Jun 11 19:44:45 2022 UTC (2 years, 6 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2022Q3-base, pkgsrc-2022Q3, pkgsrc-2022Q2-base, pkgsrc-2022Q2
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +3 -3 lines
biology/biolibc-tools: Update to 0.1.3

Add vcf-downsample subcommand
Improvements to build system
extract-seq: Recurse to output subfeatures
Numerous other minor enhancements and fixes
Changes: https://github.com/auerlab/biolibc-tools/releases
Revision 1.5: download - view: text, markup, annotated - select for diffs
Tue Mar 15 21:10:59 2022 UTC (2 years, 8 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2022Q1-base, pkgsrc-2022Q1
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +3 -3 lines
biology/biolibc-tools: Update to 0.1.2

New fastx-stats and ensembl2gene subcommands
Minor updates for biolibc 0.2.2 API changes
Minor bug fixes and ennancements
Revision 1.4: download - view: text, markup, annotated - select for diffs
Tue Dec 14 19:05:39 2021 UTC (2 years, 11 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q4-base, pkgsrc-2021Q4
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +4 -4 lines
biology/biolibc-tools: Update to 0.1.1

Make all programs subcommands of "blt"
Several new commands
Updates for evolving libxtend and biolibc APIs
Add --version flag
Numerous minor fixes and enhancements

Changes: https://github.com/auerlab/biolibc-tools/releases/tag/0.1.1
Revision 1.3: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:03:37 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +2 -2 lines
biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
Revision 1.2: download - view: text, markup, annotated - select for diffs
Thu Oct 7 13:19:44 2021 UTC (3 years, 2 months ago) by nia
Branches: MAIN
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +1 -2 lines
biology: Remove SHA1 hashes for distfiles
Revision 1.1: download - view: text, markup, annotated - select for diffs
Tue Aug 31 15:55:16 2021 UTC (3 years, 3 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base, pkgsrc-2021Q3
biology/biolibc-tools: import biolibc-tools-0.1.0.36

Biolibc-tools is a collection of simple, fast, and memory-efficient
programs for processing biological data.  These programs built on
biolibc are not complex enough to warrant separate projects.
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