CVS log for pkgsrc/biology/bedtools/distinfo
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Default branch: MAIN
Revision 1.5: download - view: text, markup, annotated - select for diffs
Wed Nov 8 16:46:44 2023 UTC (13 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
pkgsrc-2024Q2-base,
pkgsrc-2024Q2,
pkgsrc-2024Q1-base,
pkgsrc-2024Q1,
pkgsrc-2023Q4-base,
pkgsrc-2023Q4,
HEAD
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +5 -5
lines
biology/bedtools: Update to 2.31.1
Code updates for modern compilers
Changes: https://github.com/arq5x/bedtools2/releases
Revision 1.4: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:03:37 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
CVS tags: pkgsrc-2023Q3-base,
pkgsrc-2023Q3,
pkgsrc-2023Q2-base,
pkgsrc-2023Q2,
pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2,
pkgsrc-2022Q1-base,
pkgsrc-2022Q1,
pkgsrc-2021Q4-base,
pkgsrc-2021Q4
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +2 -2
lines
biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
Revision 1.3: download - view: text, markup, annotated - select for diffs
Thu Oct 7 13:19:37 2021 UTC (3 years, 2 months ago) by nia
Branches: MAIN
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +1 -2
lines
biology: Remove SHA1 hashes for distfiles
Revision 1.2: download - view: text, markup, annotated - select for diffs
Mon Feb 8 01:49:25 2021 UTC (3 years, 10 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2,
pkgsrc-2021Q1-base,
pkgsrc-2021Q1
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +8 -6
lines
biology/bedtools: Update to 2.30.0
Some major performance improvements
Numerous minor bug fixes and enhancements
Added a do-test target to the pkgsrc Makefile
Revision 1.1: download - view: text, markup, annotated - select for diffs
Fri Jan 22 17:07:50 2021 UTC (3 years, 10 months ago) by bacon
Branches: MAIN
biology/bedtools: import bedtools-2.29.2
The bedtools utilities are a suite of tools for performing a wide range of
genomics analysis tasks. The most widely-used of these tools enable genome
arithmetic, i.e., set theory on the genome. For example, with bedtools one
can intersect, merge, count, complement, and shuffle genomic intervals from
multiple files in common genomic formats such as BAM, BED, GFF/GTF, and VCF.
Although each individual utility is designed to do a relatively simple task,
e.g., intersect two interval files, more sophisticated analyses can be
conducted by stringing together multiple bedtools operations on the command
line or in shell scripts.
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