CVS log for pkgsrc/biology/bcftools/distinfo
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Keyword substitution: kv
Default branch: MAIN
Revision 1.9: download - view: text, markup, annotated - select for diffs
Fri Oct 11 22:41:14 2024 UTC (8 weeks, 3 days ago) by bacon
Branches: MAIN
CVS tags: HEAD
Diff to: previous 1.8: preferred, colored
Changes since revision 1.8: +3 -3
lines
biology/bcftools: Update to 1.21
Numerous bug fixes and enhancements since 1.17
Changes: https://github.com/samtools/bcftools/releases
Reported by: portscout
Revision 1.8: download - view: text, markup, annotated - select for diffs
Sat Feb 25 13:56:33 2023 UTC (21 months, 2 weeks ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
pkgsrc-2024Q2-base,
pkgsrc-2024Q2,
pkgsrc-2024Q1-base,
pkgsrc-2024Q1,
pkgsrc-2023Q4-base,
pkgsrc-2023Q4,
pkgsrc-2023Q3-base,
pkgsrc-2023Q3,
pkgsrc-2023Q2-base,
pkgsrc-2023Q2,
pkgsrc-2023Q1-base,
pkgsrc-2023Q1
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +3 -3
lines
biology/bcftools: Update to 1.17
Numerous enhancements and bug fixes
Changes: https://github.com/samtools/bcftools/releases
Revision 1.7: download - view: text, markup, annotated - select for diffs
Sat Feb 26 23:14:33 2022 UTC (2 years, 9 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2,
pkgsrc-2022Q1-base,
pkgsrc-2022Q1
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +3 -3
lines
biology/bcftools: Update to 1.15
Several minor enhancements and bug fixes
Changes: https://github.com/samtools/bcftools/tags
Revision 1.6: download - view: text, markup, annotated - select for diffs
Fri Dec 17 15:14:35 2021 UTC (2 years, 11 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q4-base,
pkgsrc-2021Q4
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +4 -4
lines
biology/bcftools: Update to 1.14
Numerous fixes and enhancments since 1.12
Changes: https://github.com/samtools/bcftools/tags
Revision 1.5: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:03:36 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +2 -2
lines
biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
Revision 1.4: download - view: text, markup, annotated - select for diffs
Thu Oct 7 13:19:37 2021 UTC (3 years, 2 months ago) by nia
Branches: MAIN
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +1 -2
lines
biology: Remove SHA1 hashes for distfiles
Revision 1.3: download - view: text, markup, annotated - select for diffs
Sat Mar 20 18:17:07 2021 UTC (3 years, 8 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base,
pkgsrc-2021Q3,
pkgsrc-2021Q2-base,
pkgsrc-2021Q2,
pkgsrc-2021Q1-base,
pkgsrc-2021Q1
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +5 -6
lines
biology/htslib: Update to 1.12
biology/bcftools: Update to 1.12
biology/samtools: Update to 1.12
Numerous enhancements, performance improvements, and bug fixes since 1.10
Minimized pkgsrc patches in all three packages
Moved htslib to custom tarball since Github-generated distfiles are incomplete
Revision 1.2: download - view: text, markup, annotated - select for diffs
Mon Jul 27 00:29:04 2020 UTC (4 years, 4 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2020Q4-base,
pkgsrc-2020Q4,
pkgsrc-2020Q3-base,
pkgsrc-2020Q3
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +7 -5
lines
biology/bcftools: Upgrade to 1.10.2
Numerous bug fixes, usability improvements and sanity checks were added since
1.9 to prevent common user errors.
Revision 1.1: download - view: text, markup, annotated - select for diffs
Thu Nov 15 09:21:24 2018 UTC (6 years ago) by adam
Branches: MAIN
CVS tags: pkgsrc-2020Q2-base,
pkgsrc-2020Q2,
pkgsrc-2020Q1-base,
pkgsrc-2020Q1,
pkgsrc-2019Q4-base,
pkgsrc-2019Q4,
pkgsrc-2019Q3-base,
pkgsrc-2019Q3,
pkgsrc-2019Q2-base,
pkgsrc-2019Q2,
pkgsrc-2019Q1-base,
pkgsrc-2019Q1,
pkgsrc-2018Q4-base,
pkgsrc-2018Q4
bcftools: added version 1.9
BCFtools is a program for variant calling and manipulating files in the Variant
Call Format (VCF) and its binary counterpart BCF. All commands work
transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
In order to avoid tedious repetion, throughout this document we will use "VCF"
and "BCF" interchangeably, unless specifically noted.
Most commands accept VCF, bgzipped VCF and BCF with filetype detected
automatically even when streaming from a pipe. Indexed VCF and BCF work in all
situations. Unindexed VCF and BCF and streams work in most, but not all
situations. In general, whenever multiple VCFs are read simultaneously, they
must be indexed and therefore also compressed.
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