CVS log for pkgsrc/biology/ad2vcf/distinfo
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Default branch: MAIN
Revision 1.10: download - view: text, markup, annotated - select for diffs
Fri Nov 29 12:54:12 2024 UTC (2 days, 7 hours ago) by bacon
Branches: MAIN
CVS tags: HEAD
Diff to: previous 1.9: preferred, colored
Changes since revision 1.9: +3 -3
lines
biology/ad2vcf: Update to 0.1.6.20
Rerun make depend upstream to drop system headers
Unbreak build with non-default MANDIR
Revision 1.9: download - view: text, markup, annotated - select for diffs
Sun May 19 12:56:54 2024 UTC (6 months, 1 week ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q3-base,
pkgsrc-2024Q3,
pkgsrc-2024Q2-base,
pkgsrc-2024Q2
Diff to: previous 1.8: preferred, colored
Changes since revision 1.8: +3 -3
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biology/ad2vcf: Update to 0.1.6.19
Use xt_fopen() to support all common compression tools
A few other minor improvements
Revision 1.8: download - view: text, markup, annotated - select for diffs
Sat Jun 11 19:48:32 2022 UTC (2 years, 5 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2024Q1-base,
pkgsrc-2024Q1,
pkgsrc-2023Q4-base,
pkgsrc-2023Q4,
pkgsrc-2023Q3-base,
pkgsrc-2023Q3,
pkgsrc-2023Q2-base,
pkgsrc-2023Q2,
pkgsrc-2023Q1-base,
pkgsrc-2023Q1,
pkgsrc-2022Q4-base,
pkgsrc-2022Q4,
pkgsrc-2022Q3-base,
pkgsrc-2022Q3,
pkgsrc-2022Q2-base,
pkgsrc-2022Q2
Diff to: previous 1.7: preferred, colored
Changes since revision 1.7: +3 -3
lines
biology/ad2vcf: Update to 0.1.6
Updates for bl_sam_t and bl_vcf_t API streamlining
Changes: https://github.com/auerlab/ad2vcf/releases
Revision 1.7: download - view: text, markup, annotated - select for diffs
Tue Mar 15 21:08:32 2022 UTC (2 years, 8 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2022Q1-base,
pkgsrc-2022Q1
Diff to: previous 1.6: preferred, colored
Changes since revision 1.6: +3 -3
lines
biology/ad2vcf: Update to 0.1.5
Minor update for bioloibc 0.2.2 API changes
Revision 1.6: download - view: text, markup, annotated - select for diffs
Tue Dec 14 19:02:21 2021 UTC (2 years, 11 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q4-base,
pkgsrc-2021Q4
Diff to: previous 1.5: preferred, colored
Changes since revision 1.5: +4 -4
lines
biology/ad2vcf: Update to 0.1.4
Updates for evolving libxtend and biolibc APIs
Add --version flag
Filter out unused SAM fields on input
Numerous other minor fixes and enhancements
Changes: https://github.com/auerlab/ad2vcf/releases/tag/0.1.4
Revision 1.5: download - view: text, markup, annotated - select for diffs
Tue Oct 26 10:03:36 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.4: preferred, colored
Changes since revision 1.4: +2 -2
lines
biology: Replace RMD160 checksums with BLAKE2s checksums
All checksums have been double-checked against existing RMD160 and
SHA512 hashes
Revision 1.4: download - view: text, markup, annotated - select for diffs
Thu Oct 7 13:19:36 2021 UTC (3 years, 1 month ago) by nia
Branches: MAIN
Diff to: previous 1.3: preferred, colored
Changes since revision 1.3: +1 -2
lines
biology: Remove SHA1 hashes for distfiles
Revision 1.3: download - view: text, markup, annotated - select for diffs
Sat Aug 28 18:39:10 2021 UTC (3 years, 3 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q3-base,
pkgsrc-2021Q3
Diff to: previous 1.2: preferred, colored
Changes since revision 1.2: +4 -4
lines
biology/ad2vcf: Update to 0.1.3.31
Updates for libxtend and biolibc API changes
Clean up and minor bug fixes
Revision 1.2: download - view: text, markup, annotated - select for diffs
Fri Jun 11 17:06:54 2021 UTC (3 years, 5 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q2-base,
pkgsrc-2021Q2
Diff to: previous 1.1: preferred, colored
Changes since revision 1.1: +4 -4
lines
biology/ad2vcf: Update to 0.1.3
Updates for new biolibc API
Upstream change log: https://github.com/auerlab/ad2vcf/releases
Revision 1.1: download - view: text, markup, annotated - select for diffs
Wed Mar 24 18:19:21 2021 UTC (3 years, 8 months ago) by bacon
Branches: MAIN
CVS tags: pkgsrc-2021Q1-base,
pkgsrc-2021Q1
biology/ad2vcf: import ad2vcf-0.1.2
ad2vdf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file.
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